Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32249 | Sorghum | plastid | 96.17 | 95.65 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 81.97 | 80.65 |
| Os01t0273100-01 | Rice | plastid | 81.42 | 78.01 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 76.5 | 74.07 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 75.96 | 72.02 |
| CDY45063 | Canola | cytosol | 49.73 | 71.09 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 70.49 | 70.88 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 70.49 | 69.73 |
| Bra030487.1-P | Field mustard | cytosol, plastid | 66.12 | 69.54 |
| CDY29588 | Canola | cytosol, plastid | 66.12 | 69.14 |
| CDY62105 | Canola | cytosol, plastid | 65.57 | 68.57 |
| TraesCS3B01G216000.2 | Wheat | plastid | 81.97 | 68.49 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 65.03 | 67.23 |
| CDY37132 | Canola | cytosol, plastid | 66.12 | 66.85 |
| CDY42228 | Canola | plastid | 66.12 | 66.85 |
| CDY22799 | Canola | cytosol, plastid | 66.12 | 66.85 |
| Bra018852.1-P | Field mustard | cytosol, plastid | 66.12 | 66.85 |
| AT1G50490.1 | Thale cress | plastid | 65.57 | 66.67 |
| Bra038253.1-P | Field mustard | nucleus | 65.57 | 66.3 |
| Bra035819.1-P | Field mustard | cytosol, plastid | 65.03 | 65.75 |
| KRH24100 | Soybean | cytosol, plastid | 64.48 | 65.56 |
| CDY33445 | Canola | nucleus | 64.48 | 65.19 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 63.39 | 65.17 |
| CDY25375 | Canola | plastid | 64.48 | 64.84 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 64.48 | 64.84 |
| AT3G20060.1 | Thale cress | plastid | 63.93 | 64.64 |
| Solyc11g065190.1.1 | Tomato | plastid | 63.93 | 64.64 |
| Zm00001d008261_P003 | Maize | nucleus | 81.42 | 58.66 |
| Bra014255.1-P | Field mustard | cytosol | 50.82 | 56.71 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 53.01 | 53.59 |
| CDY03608 | Canola | nucleus | 30.05 | 46.61 |
| Zm00001d047354_P001 | Maize | nucleus | 31.69 | 36.25 |
| Zm00001d048473_P003 | Maize | nucleus | 31.15 | 35.62 |
| Zm00001d027427_P001 | Maize | nucleus | 31.15 | 35.62 |
| Zm00001d029740_P002 | Maize | nucleus | 28.96 | 33.12 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 27.87 | 32.08 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 29.51 | 31.95 |
| Zm00001d038376_P001 | Maize | extracellular | 29.51 | 31.95 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 28.96 | 31.36 |
| Zm00001d010534_P001 | Maize | cytosol | 28.96 | 22.36 |
| Zm00001d040631_P001 | Maize | cytosol | 24.04 | 19.38 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 28.42 | 16.05 |
| Zm00001d008383_P001 | Maize | plastid | 19.13 | 15.22 |
| Zm00001d009034_P002 | Maize | nucleus | 20.22 | 9.56 |
| Zm00001d029705_P032 | Maize | plasma membrane | 20.22 | 6.8 |
| Zm00001d005779_P153 | Maize | plasma membrane | 14.21 | 4.33 |
Protein Annotations
| EntrezGene:100192735 | MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | ProteinID:AQK89331.1 | UniProt:B4FCG1 | EMBL:BT034799 |
| EMBL:EU959191 | EMBL:EU960370 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR44189 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00017B667B | EnsemblPlantsGene:Zm00001d008260 | EnsemblPlants:Zm00001d008260_P001 | EnsemblPlants:Zm00001d008260_T001 | SEG:seg |
Description
Ubiquitin-conjugating enzyme E2 20
Coordinates
chr8:+:3371971..3373452
Molecular Weight (calculated)
19505.0 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.303
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGENQESQ TGNVSAASAA APGPKPASAG AGKGAEGQSV VRRLQSELMA LMMGGDPGVS AFPEGDNMLH WVGTIAGSAG TAYEGTSYRL ALAFTAEYPY
101: KPPKVRFDTP CFHPNVDVHG NICLDILQDK WSSAYDVRTI LLSIQSLLGE PNNDSPLNTQ AAALWANQEE FRKMVEKLYK AAA
101: KPPKVRFDTP CFHPNVDVHG NICLDILQDK WSSAYDVRTI LLSIQSLLGE PNNDSPLNTQ AAALWANQEE FRKMVEKLYK AAA
001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
Arabidopsis Description
UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.