CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 3
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20060.1	KRH10294	AT3G46090.1	17259181
AT3G20060.1	KRH23029	AT3G46090.1	17259181
AT3G20060.1	KRH24840	AT3G46090.1	17259181
AT3G20060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24100	Soybean	cytosol, plastid	79.01	79.44
VIT_06s0061g00070.t01	Wine grape	cytosol	67.96	69.49
PGSC0003DMT400080256	Potato	cytosol, plastid	67.96	69.1
Bra030487.1-P	Field mustard	cytosol, plastid	66.3	68.97
CDY62105	Canola	cytosol, plastid	66.3	68.57
CDY29588	Canola	cytosol, plastid	66.3	68.57
Solyc11g065190.1.1	Tomato	plastid	68.51	68.51
AT1G50490.1	Thale cress	plastid	67.4	67.78
CDY25375	Canola	plastid	67.4	67.03
CDY22799	Canola	cytosol, plastid	66.85	66.85
CDY37132	Canola	cytosol, plastid	66.85	66.85
Bra018852.1-P	Field mustard	cytosol, plastid	66.85	66.85
Bra035819.1-P	Field mustard	cytosol, plastid	66.3	66.3
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	66.3	65.93
CDY33445	Canola	nucleus	65.75	65.75
CDY42228	Canola	plastid	65.75	65.75
Bra038253.1-P	Field mustard	nucleus	65.75	65.75
CDY45063	Canola	cytosol	45.86	64.84
AT3G20060.1	Thale cress	plastid	64.64	64.64
GSMUA_Achr3P08740_001	Banana	cytosol	61.88	61.54
GSMUA_Achr9P17810_001	Banana	cytosol	60.77	59.46
TraesCS3A01G186500.1	Wheat	cytosol, plastid	58.01	56.45
HORVU3Hr1G038430.3	Barley	nucleus, plastid	58.01	55.56
TraesCS3D01G190400.2	Wheat	nucleus, plastid	58.01	54.4
KRH34891	Soybean	nucleus, plastid	55.8	54.3
Os01t0273100-01	Rice	plastid	56.91	53.93
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	53.59	53.01
KXG32249	Sorghum	plastid	53.59	52.72
Bra014255.1-P	Field mustard	cytosol	47.51	52.44
KRG91877	Soybean	cytosol, plastid	53.59	52.15
OQU80782	Sorghum	nucleus, plastid	50.83	48.94
TraesCS3B01G216000.2	Wheat	plastid	58.01	47.95
CDY03608	Canola	nucleus	28.18	43.22
Zm00001d008261_P003	Maize	nucleus	53.04	37.8
KRH57897	Soybean	nucleus	25.41	28.75
KRH04554	Soybean	nucleus	25.41	28.75
KRH77039	Soybean	cytosol	24.86	28.3
KRH28435	Soybean	cytosol	24.86	28.3
KRH24817	Soybean	cytosol, nucleus, plastid	25.97	28.14
KRH29815	Soybean	cytosol	25.41	27.71
KRH23052	Soybean	nucleus	25.41	27.71
KRH10280	Soybean	nucleus	25.41	27.71

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EMBL:ACUP02006778	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G095700	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	GO:GO:0031625	GO:GO:0061630
UniProt:I1LIM2	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH29075	ProteinID:KRH29075	ProteinID:KRH29075.1
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44189	SMART:SM00212	SUPFAM:SSF54495	TMHMM:TMhelix
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00023CC790	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:7263968..7265048

Molecular Weight (calculated)

20054.0 Da

IEP (calculated)

5.589

GRAVY (calculated)

0.018

Length

181 amino acids

Sequence
(BLAST)

001: MAANNNIHGN TESAQSNIAP PAKQPLHPAK AVDSQSVLKR LQSELMALMM SGDSGISAFP EEDNIFFWKG TITGSKDTVF EGTEYKLSLS FPNDYPFKPP
101: KVKFETTCFH PNFDVHGNIC LDILQDKWSS AYDVRTILLS IQSLLGGTSL EKALNLNLNA LSCLFSFLFL FLTSSFFFVT I

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.