CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91877	Soybean	cytosol, plastid	94.62	94.62
VIT_13s0019g04090.t01	Wine grape	cytosol	81.72	80.0
GSMUA_Achr10P...	Banana	cytosol	55.91	79.39
GSMUA_Achr7P22730_001	Banana	cytosol	74.19	75.41
KRH24100	Soybean	cytosol, plastid	60.75	62.78
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	54.3	55.8
KRH29815	Soybean	cytosol	30.11	33.73
KRH24817	Soybean	cytosol, nucleus, plastid	30.11	33.53
KRH10280	Soybean	nucleus	29.57	33.13
KRH23052	Soybean	nucleus	29.57	33.13
KRH04554	Soybean	nucleus	28.49	33.12
KRH57897	Soybean	nucleus	28.49	33.12
KRH28435	Soybean	cytosol	27.96	32.7
KRH77039	Soybean	cytosol	27.96	32.7

Protein Annotations

EntrezGene:100820153	MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EMBL:ACUP02006641	EnsemblPlantsGene:GLYMA_10G212200	GO:GO:0000166
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	GO:GO:0031625	GO:GO:0061630
UniProt:I1LD22	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH34891	ProteinID:KRH34891	ProteinID:KRH34891.1
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BA896A	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:44476625..44479276

Molecular Weight (calculated)

20759.5 Da

IEP (calculated)

4.593

GRAVY (calculated)

-0.390

Length

186 amino acids

Sequence
(BLAST)

001: MEVRSNPAAD NSSDHLRPPA VSSKQPLPSP TAVDTSAVSQ RLQKELMALM MSGGDLGVSA FPDGESIFTW IGTIEGGKGT QYEGLSYKLS LRFPLDYPFK
101: PPQVKFETMC FHPNVDQFGN ICLDILQDKW SSAYDCRTIL LSIQSLLEEP NLESPLNSYA AALWNDKEDY RRMVHKQYFS GEALES

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.