Factsheet for GSMUA_Achr7P22730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	65.57	91.6
KRH34891	Soybean	nucleus, plastid	75.41	74.19
VIT_13s0019g04090.t01	Wine grape	cytosol	75.96	73.16
KRG91877	Soybean	cytosol, plastid	74.32	73.12
GSMUA_Achr9P17810_001	Banana	cytosol	61.75	61.08
GSMUA_Achr3P08740_001	Banana	cytosol	60.66	60.99
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	17.49	33.68
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	29.51	32.14
GSMUA_Achr1P03640_001	Banana	nucleus	27.87	31.88
GSMUA_Achr3P05370_001	Banana	cytosol	27.87	31.88
GSMUA_AchrUn_...	Banana	nucleus	27.87	31.88
GSMUA_Achr9P14150_001	Banana	nucleus	27.32	31.25
GSMUA_Achr6P34220_001	Banana	plastid	28.42	30.95
GSMUA_Achr5P08370_001	Banana	cytosol	18.03	24.26

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr7G22730_001	EnsemblPlants:GSMUA_Achr7P22730_001	EnsemblPlants:GSMUA_Achr7T22730_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0TJV9	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002965B5A
SEG:seg	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 C [Source:GMGC_GENE;Acc:GSMUA_Achr7G22730_001]

Coordinates

chr7:+:25125073..25127331

Molecular Weight (calculated)

20149.8 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.440

Length

183 amino acids

Sequence
(BLAST)

001: MEVRNVDNAS APPPSPAPSS KQPKPPPNPV DTASVSQRLQ KELMALMMSG DTGVSAFPEG ENIFSWIGTI EGSKGTPYEG LSYKLSLKFP LDYPFKPPLV
101: KFETPCFHPN IDQCGNICLD ILQEMWSSAY DCRSILLSIQ SLLGEPNNES PLNCYAATLW SNQEDYKKMV HKQYSSGGEA LES

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.