Factsheet for PGSC0003DMT400080256

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20060.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G20060.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065190.1.1	Tomato	plastid	98.88	97.24
VIT_06s0061g00070.t01	Wine grape	cytosol	82.58	83.05
Bra030487.1-P	Field mustard	cytosol, plastid	80.9	82.76
CDY29588	Canola	cytosol, plastid	80.9	82.29
CDY45063	Canola	cytosol	58.99	82.03
CDY62105	Canola	cytosol, plastid	80.34	81.71
AT1G50490.1	Thale cress	plastid	81.46	80.56
KRH24100	Soybean	cytosol, plastid	80.9	80.0
CDY25375	Canola	plastid	80.9	79.12
CDY22799	Canola	cytosol, plastid	80.34	79.01
CDY37132	Canola	cytosol, plastid	80.34	79.01
Bra018852.1-P	Field mustard	cytosol, plastid	80.34	79.01
Bra035819.1-P	Field mustard	cytosol, plastid	79.78	78.45
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	79.78	78.02
CDY33445	Canola	nucleus	79.21	77.9
CDY42228	Canola	plastid	79.21	77.9
Bra038253.1-P	Field mustard	nucleus	79.21	77.9
AT3G20060.1	Thale cress	plastid	78.65	77.35
GSMUA_Achr3P08740_001	Banana	cytosol	75.84	74.18
GSMUA_Achr9P17810_001	Banana	cytosol	74.16	71.35
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	69.1	67.96
TraesCS3A01G186500.1	Wheat	cytosol, plastid	70.79	67.74
Os01t0273100-01	Rice	plastid	70.22	65.44
Bra014255.1-P	Field mustard	cytosol	60.11	65.24
KXG32249	Sorghum	plastid	66.85	64.67
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	65.17	63.39
HORVU3Hr1G038430.3	Barley	nucleus, plastid	64.61	60.85
OQU80782	Sorghum	nucleus, plastid	64.04	60.64
TraesCS3D01G190400.2	Wheat	nucleus, plastid	65.17	60.1
CDY03608	Canola	nucleus	38.76	58.47
TraesCS3B01G216000.2	Wheat	plastid	70.79	57.53
PGSC0003DMT400089754	Potato	nucleus	12.92	37.7
Zm00001d008261_P003	Maize	nucleus	52.81	37.01
PGSC0003DMT400025497	Potato	extracellular	27.53	35.51
PGSC0003DMT400039840	Potato	mitochondrion	31.46	35.0
PGSC0003DMT400046775	Potato	nucleus	31.46	34.78
PGSC0003DMT400020524	Potato	cytosol	30.9	34.38
PGSC0003DMT400023134	Potato	nucleus	30.9	32.93
PGSC0003DMT400071311	Potato	nucleus	29.78	32.12
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	30.34	31.76
PGSC0003DMT400060478	Potato	cytosol, nucleus, plastid	29.21	30.95
PGSC0003DMT400016581	Potato	nucleus	28.65	30.36
PGSC0003DMT400014261	Potato	nucleus	9.55	18.48

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M1D378	PFAM:PF00179
EnsemblPlantsGene:PGSC0003DMG400031240	PGSC:PGSC0003DMG400031240	EnsemblPlants:PGSC0003DMT400080256	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000296F8B9

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031240]

Coordinates

chr11:-:36588833..36590600

Molecular Weight (calculated)

19686.4 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.334

Length

178 amino acids

Sequence
(BLAST)

001: MNSGNNSNTP ATAAPVMPSP KQTQTTAKTV DTQSVLKRLQ SELMALMMSG DSGISAFPEE DNIFCWKGTI TGSKDTVFEG TEYKLSLSFP ADYPFKPPKV
101: KFETGCFHPN VDVYGNICLD ILQDKWSSAY DVRTILISIQ SLLGEPNISS PLNTQAAALW CNQEEYRKMV EKLYKPSV

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.