Factsheet for Bra014255.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45063	Canola	cytosol	76.22	97.66
CDY03608	Canola	nucleus	52.44	72.88
Bra030487.1-P	Field mustard	cytosol, plastid	71.34	67.24
Bra018852.1-P	Field mustard	cytosol, plastid	71.95	65.19
AT1G50490.1	Thale cress	plastid	70.73	64.44
Bra035819.1-P	Field mustard	cytosol, plastid	68.9	62.43
Bra038253.1-P	Field mustard	nucleus	67.68	61.33
VIT_06s0061g00070.t01	Wine grape	cytosol	65.85	61.02
PGSC0003DMT400080256	Potato	cytosol, plastid	65.24	60.11
KRH24100	Soybean	cytosol, plastid	65.24	59.44
Solyc11g065190.1.1	Tomato	plastid	65.24	59.12
GSMUA_Achr3P08740_001	Banana	cytosol	61.59	55.49
GSMUA_Achr9P17810_001	Banana	cytosol	60.37	53.51
TraesCS3A01G186500.1	Wheat	cytosol, plastid	58.54	51.61
KXG32249	Sorghum	plastid	57.32	51.09
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	56.71	50.82
Os01t0273100-01	Rice	plastid	57.93	49.74
HORVU3Hr1G038430.3	Barley	nucleus, plastid	56.71	49.21
TraesCS3D01G190400.2	Wheat	nucleus, plastid	56.71	48.19
OQU80782	Sorghum	nucleus, plastid	54.88	47.87
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	52.44	47.51
TraesCS3B01G216000.2	Wheat	plastid	62.8	47.03
Bra014406.1-P	Field mustard	cytosol	32.32	33.12
Bra003301.1-P	Field mustard	cytosol	31.71	32.5
Bra007363.1-P	Field mustard	cytosol	31.71	32.5
Bra014602.1-P	Field mustard	cytosol	31.71	32.5
Zm00001d008261_P003	Maize	nucleus	49.39	31.89
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	31.71	31.14
Bra003210.1-P	Field mustard	nucleus	30.49	29.94
Bra002579.1-P	Field mustard	cytosol	28.66	29.56
Bra007157.1-P	Field mustard	nucleus	29.27	28.74
Bra020324.1-P	Field mustard	nucleus	28.05	27.06

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra014255	EnsemblPlants:Bra014255.1	EnsemblPlants:Bra014255.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008283
GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4DCN9	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44189	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002545FB2	:	:	:	:

Description

AT1G50490 (E=3e-061) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase

Coordinates

chrA08:+:2153406..2154071

Molecular Weight (calculated)

18599.2 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.254

Length

164 amino acids

Sequence
(BLAST)

001: MNFKMGLNNP GVSAFPEEDN IFCWKGAIKG SKETVFEGTE YRLSLSFSND YPFKPPKIKF QTTCFHPNVD VYGNICLDIL QDKWSSAYDV RTILLSIQSL
101: LGEPNISSPL NTQAAQLWSN QEGNVKKKNA GFTFHLLSFS SIMYFLRSLL FPCTEYRKMP PTSA

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.