Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.66 | 81.42 |
| OQU80782 | Sorghum | nucleus, plastid | 52.36 | 70.74 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 48.43 | 65.08 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 47.64 | 65.05 |
| Os01t0273100-01 | Rice | plastid | 48.82 | 64.92 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 48.03 | 63.21 |
| CDY45063 | Canola | cytosol | 30.32 | 60.16 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 41.34 | 57.69 |
| Bra030487.1-P | Field mustard | cytosol, plastid | 39.37 | 57.47 |
| CDY29588 | Canola | cytosol, plastid | 39.37 | 57.14 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 41.34 | 56.76 |
| CDY62105 | Canola | cytosol, plastid | 38.98 | 56.57 |
| CDY42228 | Canola | plastid | 39.76 | 55.8 |
| TraesCS3B01G216000.2 | Wheat | plastid | 48.03 | 55.71 |
| CDY37132 | Canola | cytosol, plastid | 39.37 | 55.25 |
| CDY22799 | Canola | cytosol, plastid | 39.37 | 55.25 |
| Bra038253.1-P | Field mustard | nucleus | 39.37 | 55.25 |
| Bra018852.1-P | Field mustard | cytosol, plastid | 39.37 | 55.25 |
| KRH24100 | Soybean | cytosol, plastid | 38.98 | 55.0 |
| AT1G50490.1 | Thale cress | plastid | 38.98 | 55.0 |
| Bra035819.1-P | Field mustard | cytosol, plastid | 38.98 | 54.7 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 37.8 | 54.24 |
| CDY33445 | Canola | nucleus | 38.58 | 54.14 |
| CDY25375 | Canola | plastid | 38.58 | 53.85 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 38.58 | 53.85 |
| AT3G20060.1 | Thale cress | plastid | 38.19 | 53.59 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 37.8 | 53.04 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 37.01 | 52.81 |
| Solyc11g065190.1.1 | Tomato | plastid | 37.4 | 52.49 |
| Bra014255.1-P | Field mustard | cytosol | 31.89 | 49.39 |
| CDY03608 | Canola | nucleus | 15.75 | 33.9 |
| Zm00001d047354_P001 | Maize | nucleus | 19.68 | 31.25 |
| Zm00001d048473_P003 | Maize | nucleus | 19.29 | 30.62 |
| Zm00001d027427_P001 | Maize | nucleus | 19.29 | 30.62 |
| Zm00001d029740_P002 | Maize | nucleus | 17.72 | 28.12 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 17.32 | 27.67 |
| Zm00001d038376_P001 | Maize | extracellular | 18.11 | 27.22 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 17.72 | 26.63 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 17.72 | 26.63 |
| Zm00001d010534_P001 | Maize | cytosol | 18.5 | 19.83 |
| Zm00001d040631_P001 | Maize | cytosol | 16.54 | 18.5 |
| Zm00001d008383_P001 | Maize | plastid | 12.6 | 13.91 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 17.72 | 13.89 |
| Zm00001d009034_P002 | Maize | nucleus | 13.78 | 9.04 |
| Zm00001d029705_P032 | Maize | plasma membrane | 14.17 | 6.62 |
| Zm00001d005779_P153 | Maize | plasma membrane | 8.27 | 3.5 |
Protein Annotations
| MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | ProteinID:AQK89333.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:K7USW8 |
| PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44189 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000220A77E | EnsemblPlantsGene:Zm00001d008261 | EnsemblPlants:Zm00001d008261_P003 |
| EnsemblPlants:Zm00001d008261_T003 | SEG:seg | : | : | : | : |
Description
Ubiquitin-conjugating enzyme E2 20
Coordinates
chr8:+:3372026..3373452
Molecular Weight (calculated)
27703.2 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.263
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGENQESQ TGNVSAASAA APGPKPASAG AGKGAEGQSV VRRLQSELMA LMMGGDPGVS AFPEGDNMLH WVGTIAGSAG TAYEGTSYRL ALAFTAEYPY
101: KPPKVRFDTP CFHPNVDVHG NICLDILQDK WSSAYDVRTI LLSIQSLLGG NGSLLIARFL RLFGRSMDLV RRLRFSPTDY DLFRAEQRLA AQHAGGGALG
201: EPGRVQEDGG EALQGRRVED STRRRCRLRF FKHRSHLDRL TWMVLLGWVP SLVL
101: KPPKVRFDTP CFHPNVDVHG NICLDILQDK WSSAYDVRTI LLSIQSLLGG NGSLLIARFL RLFGRSMDLV RRLRFSPTDY DLFRAEQRLA AQHAGGGALG
201: EPGRVQEDGG EALQGRRVED STRRRCRLRF FKHRSHLDRL TWMVLLGWVP SLVL
001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
Arabidopsis Description
UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.