Factsheet for Bra018852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37132	Canola	cytosol, plastid	100.0	100.0
CDY22799	Canola	cytosol, plastid	99.45	99.45
Bra030487.1-P	Field mustard	cytosol, plastid	93.92	97.7
AT1G50490.1	Thale cress	plastid	95.03	95.56
Bra035819.1-P	Field mustard	cytosol, plastid	93.37	93.37
Bra038253.1-P	Field mustard	nucleus	90.06	90.06
VIT_06s0061g00070.t01	Wine grape	cytosol	80.11	81.92
KRH24100	Soybean	cytosol, plastid	81.22	81.67
PGSC0003DMT400080256	Potato	cytosol, plastid	79.01	80.34
Solyc11g065190.1.1	Tomato	plastid	80.11	80.11
GSMUA_Achr3P08740_001	Banana	cytosol	74.03	73.63
Bra014255.1-P	Field mustard	cytosol	65.19	71.95
GSMUA_Achr9P17810_001	Banana	cytosol	71.82	70.27
TraesCS3A01G186500.1	Wheat	cytosol, plastid	69.61	67.74
KXG32249	Sorghum	plastid	68.51	67.39
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	66.85	66.85
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	66.85	66.12
Os01t0273100-01	Rice	plastid	68.51	64.92
OQU80782	Sorghum	nucleus, plastid	65.19	62.77
HORVU3Hr1G038430.3	Barley	nucleus, plastid	63.54	60.85
TraesCS3D01G190400.2	Wheat	nucleus, plastid	64.09	60.1
TraesCS3B01G216000.2	Wheat	plastid	69.61	57.53
Zm00001d008261_P003	Maize	nucleus	55.25	39.37
Bra014602.1-P	Field mustard	cytosol	32.6	36.88
Bra007363.1-P	Field mustard	cytosol	32.6	36.88
Bra003301.1-P	Field mustard	cytosol	32.6	36.88
Bra014406.1-P	Field mustard	cytosol	32.04	36.25
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	32.04	34.73
Bra003210.1-P	Field mustard	nucleus	31.49	34.13
Bra002579.1-P	Field mustard	cytosol	28.18	32.08
Bra020324.1-P	Field mustard	nucleus	29.28	31.18
Bra007157.1-P	Field mustard	nucleus	28.73	31.14

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra018852	EnsemblPlants:Bra018852.1	EnsemblPlants:Bra018852.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DQQ9	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000253EAED

Description

AT1G50490 (E=1e-098) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase

Coordinates

chrA06:+:1603145..1604291

Molecular Weight (calculated)

19963.6 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.447

Length

181 amino acids

Sequence
(BLAST)

001: MAAVNGYQGN TPAADPPASN GSKQSAPPTK TVDSQSVLKR LQSELMGLMM GGDPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLS FSNDYPFKPP
101: KIKFQTTCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNTQAAQ LWSNQEEYRK MVEKLYKPPS A

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.