Factsheet for Bra007363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra002801.1-P
Bra006864.1-P
Bra017053.1-P
Bra033014.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	Bra000147.1-P	AT2G39760.1	21798944
AT3G57870.1	Bra017053.1-P	AT2G39760.1	21798944
AT3G57870.1	Bra002801.1-P	AT5G56630.1	21798944
AT3G57870.1	Bra006864.1-P	AT5G56630.1	21798944
AT3G57870.1	Bra033014.1-P	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70581	Canola	cytosol	99.38	99.38
Bra003301.1-P	Field mustard	cytosol	98.75	98.75
CDX71988	Canola	nucleus	98.75	98.75
Bra014602.1-P	Field mustard	cytosol	98.12	98.12
AT3G57870.1	Thale cress	cytosol	94.38	94.38
KRH28435	Soybean	cytosol	91.25	91.82
KRH77039	Soybean	cytosol	91.25	91.82
KRH04554	Soybean	nucleus	88.75	88.75
KRH57897	Soybean	nucleus	88.75	88.75
Solyc12g088680.1.1	Tomato	cytosol	84.38	84.38
PGSC0003DMT400020524	Potato	cytosol	84.38	84.38
Solyc04g078620.2.1	Tomato	nucleus	84.38	84.38
PGSC0003DMT400039840	Potato	mitochondrion	81.88	81.88
Bra014406.1-P	Field mustard	cytosol	80.62	80.62
Bra030487.1-P	Field mustard	cytosol, plastid	37.5	34.48
Bra018852.1-P	Field mustard	cytosol, plastid	36.88	32.6
Bra003210.1-P	Field mustard	nucleus	33.75	32.34
Bra035819.1-P	Field mustard	cytosol, plastid	36.25	32.04
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	33.12	31.74
Bra014255.1-P	Field mustard	cytosol	32.5	31.71
Bra038253.1-P	Field mustard	nucleus	35.62	31.49
Bra020324.1-P	Field mustard	nucleus	32.5	30.59
Bra002579.1-P	Field mustard	cytosol	30.0	30.19
Bra007157.1-P	Field mustard	nucleus	30.0	28.74

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra007363	EnsemblPlants:Bra007363.1	EnsemblPlants:Bra007363.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016925	GO:GO:0019538	GO:GO:0019789
InterPro:IPR000608	InterPro:IPR016135	UniProt:M4CT21	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002542D5D	InterPro:Ubc9	SEG:seg	:	:

Description

AT3G57870 (E=1e-077) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase

Coordinates

chrA09:-:28818826..28820186

Molecular Weight (calculated)

17864.3 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.501

Length

160 amino acids

Sequence
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGTDGSVNLM VWHCTIPGKA GTDWEGGYFP LTMHFSEDYP SKPPKCKFPP GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFIQ DAVEYKKRVK LQSKQYPPIV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.