CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88580
CDX93236
CDX93238
CDX93710
CDX99958
CDY03977
CDY07031
CDY07638
CDY07887
CDY11911
CDY20715
CDY32769
CDY32873
CDY41800
CDY61778
CDY65216
CDY68743
CDY72240

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	CDX93236	AT2G39760.1	21798944
AT3G57870.1	CDX93238	AT2G39760.1	21798944
AT3G57870.1	CDY07031	AT2G39760.1	21798944
AT3G57870.1	CDY07638	AT2G39760.1	21798944
AT3G57870.1	CDY61778	AT2G39760.1	21798944
AT3G57870.1	CDX88580	AT5G56630.1	21798944
AT3G57870.1	CDX93710	AT5G56630.1	21798944
AT3G57870.1	CDX99958	AT5G56630.1	21798944
AT3G57870.1	CDY03977	AT5G56630.1	21798944
AT3G57870.1	CDY07887	AT5G56630.1	21798944
AT3G57870.1	CDY11911	AT5G56630.1	21798944
AT3G57870.1	CDY20715	AT5G56630.1	21798944
AT3G57870.1	CDY32769	AT5G56630.1	21798944
AT3G57870.1	CDY32873	AT5G56630.1	21798944
AT3G57870.1	CDY41800	AT5G56630.1	21798944
AT3G57870.1	CDY65216	AT5G56630.1	21798944
AT3G57870.1	CDY68743	AT5G56630.1	21798944
AT3G57870.1	CDY72240	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007363.1-P	Field mustard	cytosol	98.75	98.75
CDX67711	Canola	cytosol	98.12	98.12
CDX98253	Canola	cytosol	98.12	98.12
CDY70581	Canola	cytosol	98.12	98.12
CDX88967	Canola	cytosol	97.5	97.5
CDY47661	Canola	cytosol	96.88	96.88
AT3G57870.1	Thale cress	cytosol	93.75	93.75
KRH77039	Soybean	cytosol	90.62	91.19
KRH28435	Soybean	cytosol	90.62	91.19
KRH57897	Soybean	nucleus	88.12	88.12
KRH04554	Soybean	nucleus	88.12	88.12
Solyc12g088680.1.1	Tomato	cytosol	83.75	83.75
Solyc04g078620.2.1	Tomato	nucleus	83.75	83.75
PGSC0003DMT400020524	Potato	cytosol	83.75	83.75
PGSC0003DMT400039840	Potato	mitochondrion	81.25	81.25
CDX93982	Canola	cytosol	81.25	81.25
CDY66302	Canola	cytosol	80.62	80.62
CDX73361	Canola	extracellular	29.38	51.09
CDY45063	Canola	cytosol	32.5	40.62
CDY62105	Canola	cytosol, plastid	37.5	34.29
CDY29588	Canola	cytosol, plastid	37.5	34.29
CDY22799	Canola	cytosol, plastid	36.88	32.6
CDY37132	Canola	cytosol, plastid	36.88	32.6
CDY42228	Canola	plastid	36.25	32.04
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	36.25	31.87
CDY25375	Canola	plastid	36.25	31.87
CDY53695	Canola	nucleus	33.12	31.74
CDY62383	Canola	nucleus	33.12	31.74
CDY33445	Canola	nucleus	35.62	31.49
CDY02931	Canola	cytosol, nucleus, plastid	32.5	31.14
CDX76101	Canola	cytosol, nucleus, plastid	32.5	31.14
CDY32651	Canola	nucleus	31.88	30.0
CDY02882	Canola	cytosol, mitochondrion, nucleus	31.25	29.41
CDY33025	Canola	cytosol	30.0	29.09
CDY40214	Canola	nucleus	29.38	28.14
CDY41239	Canola	nucleus	29.38	28.14
CDY03608	Canola	nucleus	20.62	27.97
CDX80292	Canola	cytosol	30.62	27.37

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:A0A078CAE7	EnsemblPlants:CDX71988	ProteinID:CDX71988	ProteinID:CDX71988.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0019789	EnsemblPlantsGene:GSBRNA2T00155759001	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	MetaCyc:PWY-7511
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143
UniParc:UPI0004EBF31D	InterPro:Ubc9	SEG:seg	:	:	:

Description

BnaC08g28860D

Coordinates

chrLK031795:+:1662836..1664863

Molecular Weight (calculated)

17820.3 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.486

Length

160 amino acids

Sequence
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGSDGSVNLM VWHCTIPGKA GTDWEGGYFP LTMHFSEDYP SKPPKCKFPP GFFHPNVYPS GTVCLSILNE
101: DSGWRPAIAV KQILVGIQDL LDTPNPADPA QTDGYHLFIQ DAVEYKKRVK LQSKQYPPIV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.