Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g011430.2.1 | Tomato | cytosol | 97.58 | 97.58 |
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 90.91 | 89.29 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 91.52 | 88.82 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 89.7 | 88.1 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 86.06 | 84.52 |
| Bra003210.1-P | Field mustard | nucleus | 85.45 | 84.43 |
| CDY62383 | Canola | nucleus | 85.45 | 84.43 |
| CDY53695 | Canola | nucleus | 85.45 | 84.43 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 84.24 | 83.23 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 84.24 | 83.23 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 84.85 | 82.84 |
| CDY40214 | Canola | nucleus | 83.64 | 82.63 |
| Bra014751.1-P | Field mustard | cytosol, nucleus, plastid | 83.64 | 82.63 |
| Bra007157.1-P | Field mustard | nucleus | 83.64 | 82.63 |
| CDY41239 | Canola | nucleus | 83.03 | 82.04 |
| Zm00001d038376_P001 | Maize | extracellular | 83.64 | 81.66 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 83.64 | 81.66 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 83.64 | 81.66 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 83.64 | 81.66 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 83.03 | 81.07 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 83.03 | 81.07 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 82.42 | 80.95 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 82.42 | 80.47 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 82.42 | 80.47 |
| PGSC0003DMT400023134 | Potato | nucleus | 80.61 | 79.64 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 79.39 | 77.51 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 79.39 | 77.51 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 79.39 | 77.51 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 61.21 | 74.26 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 76.36 | 73.26 |
| AT3G55380.2 | Thale cress | nucleus | 84.24 | 69.15 |
| TraesCS1B01G294400.2 | Wheat | plastid | 79.39 | 65.5 |
| Zm00001d010534_P001 | Maize | cytosol | 82.42 | 57.38 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 83.64 | 54.55 |
| GSMUA_Achr5P08330_001 | Banana | extracellular, golgi, vacuole | 30.91 | 53.68 |
| Zm00001d040631_P001 | Maize | cytosol | 58.18 | 42.29 |
| PGSC0003DMT400089754 | Potato | nucleus | 13.94 | 37.7 |
| PGSC0003DMT400046775 | Potato | nucleus | 32.73 | 33.54 |
| PGSC0003DMT400020524 | Potato | cytosol | 31.52 | 32.5 |
| PGSC0003DMT400039840 | Potato | mitochondrion | 30.3 | 31.25 |
| PGSC0003DMT400025497 | Potato | extracellular | 25.45 | 30.43 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 32.12 | 29.78 |
| PGSC0003DMT400016581 | Potato | nucleus | 27.88 | 27.38 |
| PGSC0003DMT400014261 | Potato | nucleus | 11.52 | 20.65 |
| Zm00001d008383_P001 | Maize | plastid | 27.27 | 19.57 |
| Zm00001d009034_P002 | Maize | nucleus | 43.03 | 18.35 |
| Zm00001d029705_P032 | Maize | plasma membrane | 29.09 | 8.82 |
| Zm00001d005779_P153 | Maize | plasma membrane | 20.0 | 5.5 |
Protein Annotations
| EntrezGene:102588776 | MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | Gene3D:3.10.110.10 | ProteinID:ABB55390 | ProteinID:ABB55390.1 |
| ProteinID:ABB86243 | ProteinID:ABB86243.1 | ProteinID:ABB86270 | ProteinID:ABB86270.1 | EMBL:DQ252513 | EMBL:DQ284455 |
| EMBL:DQ284482 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | InterPro:IPR000608 | InterPro:IPR016135 | RefSeq:NP_001275063.1 | PFAM:PF00179 | EnsemblPlantsGene:PGSC0003DMG400027733 |
| PGSC:PGSC0003DMG400027733 | EnsemblPlants:PGSC0003DMT400071311 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 |
| UniProt:Q2XTC0 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI00005E47A2 | SEG:seg | : | : | : | : |
Description
Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027733]
Coordinates
chr4:-:7024520..7028208
Molecular Weight (calculated)
18647.9 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.458
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD ESNLFEWSVT IIGPQDTLYE GGFFNAIMSF PENYPNSPPT VRFTTEIWHP NVYSDGKVCI SILHPPGDDP
101: NGYEYASERW SPVHTVESII LSIISMLSSP NDESPANVEA AKEWREKRDE FKKRVSRCVR RSQDL
101: NGYEYASERW SPVHTVESII LSIISMLSSP NDESPANVEA AKEWREKRDE FKKRVSRCVR RSQDL
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.