Factsheet for Bra007736.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000047.1-P
Bra001342.1-P
Bra006136.1-P
Bra021765.1-P
Bra023354.1-P
Bra025379.1-P
Bra029726.1-P
Bra033088.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	Bra021765.1-P	AT2G31985.1	21798944
AT3G63210.1	Bra000047.1-P	AT2G38270.1	21798944
AT3G63210.1	Bra001342.1-P	AT3G08850.1	21798944
AT3G63210.1	Bra029726.1-P	AT3G08850.1	21798944
AT3G63210.1	Bra025379.1-P	AT3G29160.1	21798944
AT3G63210.1	Bra033088.1-P	AT3G29160.1	21798944
AT3G63210.1	Bra006136.1-P	AT5G11980.1	21798944
AT3G63210.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56452	Canola	plastid	88.41	87.29
CDX76690	Canola	plastid	85.84	85.47
AT3G63210.1	Thale cress	mitochondrion, plastid	58.37	51.71
Bra040437.1-P	Field mustard	mitochondrion, plastid	62.66	36.59
GSMUA_Achr3P25470_001	Banana	mitochondrion	30.9	30.51
Bra023820.1-P	Field mustard	mitochondrion	33.05	29.39
Bra001873.1-P	Field mustard	mitochondrion	32.62	28.79
GSMUA_Achr1P14130_001	Banana	mitochondrion	35.19	28.67
Os03t0665200-01	Rice	nucleus	36.05	27.81
Bra039962.1-P	Field mustard	mitochondrion, nucleus	31.76	27.61
GSMUA_Achr9P25720_001	Banana	nucleus	36.48	25.91
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	31.33	25.89
EER91113	Sorghum	mitochondrion	34.76	25.8
Zm00001d013595_P001	Maize	mitochondrion	35.62	25.78
GSMUA_Achr2P08850_001	Banana	plastid	32.62	25.5
Zm00001d032937_P001	Maize	cytosol	29.61	24.47
TraesCS4D01G016600.1	Wheat	mitochondrion	29.18	24.29
Bra023326.1-P	Field mustard	plastid	23.18	23.68
Bra007780.1-P	Field mustard	nucleus	29.61	23.31
Bra008960.1-P	Field mustard	nucleus, plastid	27.47	23.27
Bra000551.1-P	Field mustard	cytosol, mitochondrion	25.32	23.14
TraesCS4A01G295300.1	Wheat	plastid	29.61	23.08
GSMUA_Achr6P22030_001	Banana	cytosol	29.18	22.52
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	27.04	22.42
TraesCS4B01G018400.1	Wheat	plastid	28.33	21.71
Os10t0422600-01	Rice	endoplasmic reticulum	31.76	21.45
GSMUA_Achr4P22610_001	Banana	nucleus	32.62	20.21
GSMUA_Achr4P21250_001	Banana	nucleus	30.47	19.35
Bra003541.1-P	Field mustard	nucleus, plastid	19.31	16.19
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	21.46	11.44
HORVU3Hr1G018540.1	Barley	extracellular	4.29	7.69

Protein Annotations

EnsemblPlants:Bra007736.1	EnsemblPlants:Bra007736.1-P	EnsemblPlantsGene:Bra007736	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF11	PFAM:PF04570	PFscan:PS51795	SEG:seg	UniParc:UPI0002542BA7	UniProt:M4CU42
MapMan:27.3.3	:	:	:	:	:

Description

AT3G63210 (E=2e-078) MARD1 | MARD1

Coordinates

chrA09:-:30628494..30629292

Molecular Weight (calculated)

25799.6 Da

IEP (calculated)

7.356

GRAVY (calculated)

-0.303

Length

233 amino acids

Sequence
(BLAST)

001: MADQLPSPTP NTYYSSVFTS PKFRFFSSNI TPFDSIISPT STLEANHSHP SISSSSINPR LTSCYEPTLI PKPQRFLHPP EAFGLADLVK SKDRSSKPVN
101: KMVLFGSKLR VQIPSADFGT KSAAACTSPC LKTKVLTVSE VDQTEDYTRV ISHGPNPTIT HIFDNSVIVE ATPPCSVPLA QVPVETKANF LSCCYTCNKN
201: LDQKHDIYIY RGEKGFCSCE CRYQEMLLDQ MEG

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.