Factsheet for PGSC0003DMT400082082

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082210.2.1	Tomato	cytosol, plastid	90.73	93.2
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	55.3	57.19
KRG91310	Soybean	nucleus, plastid	45.36	50.93
KRH35505	Soybean	nucleus, plastid	44.37	50.38
KRH77839	Soybean	plastid	41.72	48.28
KRH27651	Soybean	plastid	41.39	48.26
GSMUA_Achr3P25470_001	Banana	mitochondrion	32.78	41.95
GSMUA_Achr1P14130_001	Banana	mitochondrion	37.75	39.86
GSMUA_Achr2P08850_001	Banana	plastid	38.74	39.26
GSMUA_Achr9P25720_001	Banana	nucleus	40.07	36.89
Os03t0665200-01	Rice	nucleus	34.11	34.11
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	31.79	34.04
EER91113	Sorghum	mitochondrion	34.11	32.8
GSMUA_Achr4P22610_001	Banana	nucleus	40.4	32.45
TraesCS4D01G016600.1	Wheat	mitochondrion	29.8	32.14
Zm00001d013595_P001	Maize	mitochondrion	33.77	31.68
TraesCS4A01G295300.1	Wheat	plastid	30.46	30.77
GSMUA_Achr6P22030_001	Banana	cytosol	30.46	30.46
GSMUA_Achr4P21250_001	Banana	nucleus	35.1	28.88
TraesCS4B01G018400.1	Wheat	plastid	28.48	28.29
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	24.83	26.69
Zm00001d032937_P001	Maize	cytosol	24.83	26.6
PGSC0003DMT400037607	Potato	nucleus	34.44	26.46
Os10t0422600-01	Rice	endoplasmic reticulum	27.15	23.77
PGSC0003DMT400037957	Potato	plastid	21.85	22.53
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	27.48	18.99
HORVU3Hr1G018540.1	Barley	extracellular	4.64	10.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400082082	EnsemblPlantsGene:PGSC0003DMG400032251	EntrezGene:102602108	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF26	PFAM:PF04570	PFscan:PS51795	PGSC:PGSC0003DMG400032251	RefSeq:XP_006360776.1	SEG:seg
UniParc:UPI0002950307	UniProt:M1D5K9	MapMan:27.3.3	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032251]

Coordinates

chr9:-:53922541..53925448

Molecular Weight (calculated)

33262.2 Da

IEP (calculated)

5.212

GRAVY (calculated)

-0.475

Length

302 amino acids

Sequence
(BLAST)

001: MADYNSLPSP MENSRKTSSF FGSPRLFTCF SAKGFPDTES IMSPTSILDS KPFTVLRNPF WSDPKSPKPE SRVHFQKLDS KGVGLGLVDA LIDEKSDSKE
101: MNSISRMVVL GSQLKIQIPT LPPSFNYPTD SPPSPGDFGI KTRNSQLGSF SPGFSPSPVK KSPFGSSNSN IDIPNSPGAF SSLSAAEMEL SEEYTCVISY
201: GPNPRTTHIF DDCILESCCG VVKYSASRKE NETFPNPPMS YPSESFLSFC HNCKKNLGIG KDIYMYRGEK AFCSSDCRYK EMMLEEGMDK SETDDNVFGI
301: IS

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.