Factsheet for TraesCS4B01G078400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G077000.1	Wheat	nucleus	91.56	91.15
HORVU4Hr1G013330.1	Barley	nucleus	83.56	84.68
TraesCS5B01G078100.1	Wheat	nucleus	51.11	61.17
Os03t0607700-01	Rice	nucleus	59.11	54.29
Zm00001d013743_P001	Maize	nucleus	54.67	54.19
EER91243	Sorghum	nucleus	63.11	53.79
Zm00001d030850_P001	Maize	nucleus	46.22	51.49
Zm00001d033363_P001	Maize	nucleus	58.22	50.38
Zm00001d041332_P001	Maize	nucleus	47.11	50.24
VIT_03s0091g00260.t01	Wine grape	nucleus	34.22	40.74
KRH35714	Soybean	nucleus	33.33	39.89
VIT_18s0001g09590.t01	Wine grape	nucleus	33.78	39.38
GSMUA_Achr10P...	Banana	nucleus	31.56	39.01
VIT_07s0129g00670.t01	Wine grape	nucleus	33.33	38.86
KRG91058	Soybean	nucleus	32.89	38.74
Solyc01g107430.2.1	Tomato	nucleus	29.78	38.73
TraesCS2B01G210500.1	Wheat	nucleus	30.22	37.99
PGSC0003DMT400066536	Potato	nucleus	28.89	37.57
GSMUA_Achr6P24010_001	Banana	nucleus	28.44	36.78
Solyc10g049870.1.1	Tomato	nucleus	28.0	36.63
PGSC0003DMT400059824	Potato	nucleus	27.56	36.05
KRH58019	Soybean	nucleus	30.22	34.17
TraesCS7B01G174400.1	Wheat	nucleus	21.78	32.03
KRH04497	Soybean	nucleus	29.33	31.43
KRH57480	Soybean	nucleus	27.56	31.16
TraesCS5B01G363400.1	Wheat	nucleus	20.0	29.61
TraesCS5B01G363600.1	Wheat	nucleus	18.67	28.19
TraesCS5B01G363300.1	Wheat	nucleus	20.44	26.9
TraesCS4B01G229200.1	Wheat	nucleus	28.89	26.75
TraesCS5B01G363200.1	Wheat	mitochondrion	20.0	21.63
TraesCS3B01G560300.1	Wheat	nucleus	23.11	20.47

Protein Annotations

EnsemblPlants:TraesCS4B01G078400.1	EnsemblPlantsGene:TraesCS4B01G078400	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR26374	PANTHER:PTHR26374:SF228
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr4B:-:75530757..75531434

Molecular Weight (calculated)

24583.9 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.645

Length

225 amino acids

Sequence
(BLAST)

001: MQDRGMEQTE EAVSASPARM LTAAAEQQGD AATWLNLTLG VNCSQPAEED SSSYSDEEPA AKHKQEHPPT PPPAAAAAPT PPHKVFSCNF CMRKFFSSQA
101: LGGHQNAHKR ERSAAKRSSS LSYHHAHHQR MVMAGLPLEA HAAIVRVLRV NPASSAINKP ARQEATAPRL HDGVVGPWPP LVYEEVLGST SWPGSFRMRT
201: QTEPPTSEQQ LLPEQTKKMD LSLRL

Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)

001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL

Arabidopsis Description

ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.