Factsheet for PGSC0003DMT400034689

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011890.1.1	Tomato	nucleus	97.98	98.37
PGSC0003DMT400060730	Potato	nucleus	65.18	68.22
KRH17304	Soybean	nucleus	57.09	54.86
KRH72952	Soybean	nucleus	57.09	54.86
PGSC0003DMT400075890	Potato	nucleus	31.17	53.85
KRG97966	Soybean	nucleus	51.42	50.6
PGSC0003DMT400075898	Potato	nucleus	46.15	48.51
PGSC0003DMT400075895	Potato	nucleus	45.75	48.09
PGSC0003DMT400058615	Potato	nucleus	48.58	48.0
KRH30916	Soybean	nucleus	47.37	46.99
VIT_01s0011g06200.t01	Wine grape	nucleus	46.15	46.34
GSMUA_Achr6P11350_001	Banana	nucleus	40.89	45.5
PGSC0003DMT400059824	Potato	nucleus	25.1	36.05
PGSC0003DMT400048247	Potato	nucleus, plastid	22.27	35.48
PGSC0003DMT400066536	Potato	nucleus	24.7	35.26
Zm00001d047968_P001	Maize	nucleus	29.96	34.91
Zm00001d028371_P001	Maize	nucleus	30.77	34.7
TraesCS4D01G230300.1	Wheat	nucleus	29.96	33.95
EER92577	Sorghum	cytosol, mitochondrion, nucleus	31.17	33.62
Os03t0239300-01	Rice	nucleus	32.39	33.33
HORVU4Hr1G064150.1	Barley	plastid	31.58	32.91
TraesCS4A01G073200.1	Wheat	nucleus	31.98	32.64
TraesCS4B01G229200.1	Wheat	nucleus	31.98	32.51
PGSC0003DMT400036628	Potato	nucleus	29.15	32.43
PGSC0003DMT400073330	Potato	nucleus	25.51	31.34
HORVU0Hr1G008920.1	Barley	mitochondrion	5.67	18.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400034689	EnsemblPlantsGene:PGSC0003DMG400013329	EntrezGene:102579548	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239
PFscan:PS50157	PGSC:PGSC0003DMG400013329	RefSeq:XP_006352391.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI000296D5D2	UniProt:M1B140	MapMan:15.5.15	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013329]

Coordinates

chr11:+:871378..874207

Molecular Weight (calculated)

27261.8 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.428

Length

247 amino acids

Sequence
(BLAST)

001: MQTPRFNLEV EALFEDDSDI TSQVASNICV GETFTDPSKN RVIDFTQLSS EHVSLDLSLS QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC
101: QRKFYSSQAL GGHQNAHKRE RTLAKRAMRM GVFSERYANL ASLPLHGSTI RSLGIKAHAS LHQMSAPAIR PLNFKSARFE YGNRQSPPLY MENDDADQLV
201: LWPGSFRQVT NPGTSHTNFS LDGCSNVTLT PYVEKDEPIA PDLTLRL

Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)

001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL

Arabidopsis Description

ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.