Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G360600.1 | Wheat | nucleus | 77.99 | 72.09 |
| HORVU5Hr1G088860.1 | Barley | nucleus | 81.13 | 64.18 |
| TraesCS5A01G361000.1 | Wheat | nucleus | 63.52 | 63.52 |
| Zm00001d021386_P001 | Maize | nucleus | 48.43 | 43.5 |
| EER99346 | Sorghum | nucleus | 45.91 | 43.2 |
| TraesCS7A01G276700.1 | Wheat | nucleus | 35.85 | 38.26 |
| VIT_11s0052g01120.t01 | Wine grape | nucleus | 30.82 | 31.82 |
| PGSC0003DMT400048247 | Potato | nucleus, plastid | 30.19 | 30.97 |
| KRH19009 | Soybean | nucleus | 31.45 | 30.49 |
| KRH02887 | Soybean | nucleus | 30.82 | 30.25 |
| Bra006815.1-P | Field mustard | nucleus, plastid | 28.3 | 30.0 |
| CDY11864 | Canola | nucleus, plastid | 28.3 | 30.0 |
| CDY60000 | Canola | nucleus, plastid | 27.67 | 29.33 |
| CDY58140 | Canola | nucleus, plastid | 27.67 | 29.33 |
| Bra020437.1-P | Field mustard | nucleus, plastid | 27.67 | 29.33 |
| AT5G57520.1 | Thale cress | nucleus, plastid | 27.67 | 29.33 |
| Solyc07g006880.1.1 | Tomato | nucleus, plastid | 29.56 | 28.83 |
| TraesCS2A01G183800.1 | Wheat | nucleus | 25.79 | 23.43 |
| TraesCS5A01G071900.1 | Wheat | nucleus | 27.04 | 22.87 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 25.16 | 21.62 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 28.3 | 18.59 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 29.56 | 18.08 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G360700.1 | EnsemblPlantsGene:TraesCS5A01G360700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr5A:-:562116476..562116955
Molecular Weight (calculated)
16610.4 Da
IEP (calculated)
7.712
GRAVY (calculated)
-0.357
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEAPQSHQ LLLHGVSLDL RLDTATATHQ LRGARRPASP APTPVAFDQA GKEAFSCNYC QRKFLSSQAL AGHQNAHKLE RTLAKRSRDA SSTAATAAQT
101: ATPSSHWPHA GGGELWAYSA SAAAPDSTTM APLMGMGWAG STTAATGEAV PEMDLSLKL
101: ATPSSHWPHA GGGELWAYSA SAAAPDSTTM APLMGMGWAG STTAATGEAV PEMDLSLKL
001: MDYQPNTSLR LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK FYSSQALGGH QNAHKLERTL AKKSRELFRS SNTVDSDQPY
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL
Arabidopsis Description
ZFP2Zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39261]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.