CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008665_P001	Maize	nucleus	89.31	89.66
Os01t0165000-02	Rice	nucleus	70.61	67.52
TraesCS3A01G099200.1	Wheat	nucleus	66.79	62.95
PGSC0003DMT400041067	Potato	nucleus	21.76	48.31
KXG21735	Sorghum	nucleus	35.5	27.68
KXG40072	Sorghum	nucleus	27.48	22.78
EES18376	Sorghum	mitochondrion	20.23	22.27
KXG21759	Sorghum	nucleus	20.61	21.01
EER92302	Sorghum	nucleus	25.19	18.8
OQU80673	Sorghum	nucleus	26.72	18.04

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8075101	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XNL0
ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlants:EES02409	ProteinID:EES02409	ProteinID:EES02409.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009414	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF16
SMART:SM00380	EnsemblPlantsGene:SORBI_3003G058200	SUPFAM:SSF54171	unigene:Sbi.13827	UniParc:UPI0001A850C4	RefSeq:XP_002457289.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:5141620..5143869

Molecular Weight (calculated)

28643.3 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.639

Length

262 amino acids

Sequence
(BLAST)

001: MELGDATAGQ GAQGDAASGA LVRKKRMRRK STGPDSIAET IKWWKEQNQK LQDESGSRKA PAKGSKKGCM TGKGGPENVN CVYRGVRQRT WGKWVAEIRE
101: PNRGRRLWLG SFPTAVEAAH AYDEAAKAMY GPKARVNFSD NSADANSGCT SALSLLASSV PVATLQRSDE KVETEVESVE TEVHEVKTEG NDDLGSVHVA
201: CKTVDVIQSE KSVLHKAGEV SYDYFNVEEV VEMIIIELNA DKKIEAHEEY HDGDDGFSLF AY

Best Arabidopsis Sequence Match ( AT2G40340.6 )
(BLAST)

001: MKTSSCSYFG VITFRKRKSR GTRDVAEILR QWREYNEQIE AESCIDGGGP KSIRKPPPKG SRKGCMKGKG GPENGICDYR GVRQRRWGKW VAEIREPDGG
101: ARLWLGTFSS SYEAALAYDE AAKAIYGQSA RLNLPEITNR SSSTAATATV SGSVTAFSDE SEVCAREDTN ASSGFGQVKL EDCSDEYVLL DSSQCIKEEL
201: KGKEEVREEH NLAVGFGIGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA
301: QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.