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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol, extracellular, plasma membrane, plastid, vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040630.1-P Field mustard cytosol 100.0 100.0
CDY50603 Canola cytosol 98.21 98.21
CDY52886 Canola cytosol, nucleus, peroxisome 76.79 68.8
CDX96125 Canola cytosol, mitochondrion, nucleus 74.11 65.35
AT1G66820.1 Thale cress cytosol, extracellular, nucleus 62.5 64.22
Protein Annotations
EnsemblPlants:CDY12589EnsemblPlantsGene:GSBRNA2T00070083001PANTHER:PTHR34201PANTHER:PTHR34201:SF2ProteinID:CDY12589ProteinID:CDY12589.1
SEG:segTMHMM:TMhelixUniParc:UPI0002545B29UniProt:A0A078FHY1MapMan:35.2:
Description
BnaA02g12570DBnaA02g12570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHY1]
Coordinates
chrLK032025:+:47285..47783
Molecular Weight (calculated)
11435.8 Da
IEP (calculated)
9.212
GRAVY (calculated)
0.041
Length
112 amino acids
Sequence
(BLAST)
001: MRSSDNLWTR KPEAKTGKSE FPVIRFIRRY MENIKDKAGG PGVGGGIGCG AGLGFGLAGG LGLVTSEGIN HSNVVFGIGV GCGIGVGFGY GFGVGGGFNF
101: VDIGDKLTYG KE
Best Arabidopsis Sequence Match ( AT1G66820.1 )
(BLAST)
001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.