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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 2
  • mitochondrion 2
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:mitochondrion
MultiLoc:extracellular
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50603 Canola cytosol 65.14 63.39
Bra040630.1-P Field mustard cytosol 64.22 62.5
CDY12589 Canola cytosol 64.22 62.5
CDY52886 Canola cytosol, nucleus, peroxisome 66.97 58.4
CDX96125 Canola cytosol, mitochondrion, nucleus 67.89 58.27
Bra004190.1-P Field mustard cytosol, nucleus, peroxisome 66.06 56.69
Protein Annotations
MapMan:35.2EntrezGene:843000UniProt:A0A178WPE9ProteinID:AAG60079.1ProteinID:AEE34559.1ArrayExpress:AT1G66820
EnsemblPlantsGene:AT1G66820RefSeq:AT1G66820TAIR:AT1G66820RefSeq:AT1G66820-TAIR-GEnsemblPlants:AT1G66820.1TAIR:AT1G66820.1
EMBL:AY063793EMBL:AY084403EMBL:AY091289GO:GO:0005575RefSeq:NP_564884.1ProteinID:OAP19455.1
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PANTHER:PTHR34201PANTHER:PTHR34201:SF2UniProt:Q9C9N4TMHMM:TMhelixUniParc:UPI000005EAF6SEG:seg
Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
Coordinates
chr1:+:24929887..24930627
Molecular Weight (calculated)
11049.2 Da
IEP (calculated)
8.217
GRAVY (calculated)
0.084
Length
109 amino acids
Sequence
(BLAST)
001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.