Factsheet for Bra040630.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, plasma membrane, plastid, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12589	Canola	cytosol	100.0	100.0
Bra004190.1-P	Field mustard	cytosol, nucleus, peroxisome	75.0	66.14
AT1G66820.1	Thale cress	cytosol, extracellular, nucleus	62.5	64.22

Protein Annotations

EnsemblPlants:Bra040630.1	EnsemblPlants:Bra040630.1-P	EnsemblPlantsGene:Bra040630	PANTHER:PTHR34201	PANTHER:PTHR34201:SF2	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002545B29	UniProt:M4FHQ2	MapMan:35.2	:	:

Description

AT1G66820 (E=9e-009) | glycine-rich protein

Coordinates

chrA02:+:9910671..9911009

Molecular Weight (calculated)

11435.8 Da

IEP (calculated)

9.212

GRAVY (calculated)

0.041

Length

112 amino acids

Sequence
(BLAST)

001: MRSSDNLWTR KPEAKTGKSE FPVIRFIRRY MENIKDKAGG PGVGGGIGCG AGLGFGLAGG LGLVTSEGIN HSNVVFGIGV GCGIGVGFGY GFGVGGGFNF
101: VDIGDKLTYG KE

Best Arabidopsis Sequence Match ( AT1G66820.1 )
(BLAST)

001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.