Factsheet for Bra004190.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 3
cytosol 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, mitochondrion, plasma membrane, vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96125	Canola	cytosol, mitochondrion, nucleus	95.28	95.28
Bra040630.1-P	Field mustard	cytosol	66.14	75.0
AT1G66820.1	Thale cress	cytosol, extracellular, nucleus	56.69	66.06

Protein Annotations

EnsemblPlants:Bra004190.1	EnsemblPlants:Bra004190.1-P	EnsemblPlantsGene:Bra004190	PANTHER:PTHR34201	PANTHER:PTHR34201:SF2	SEG:seg
TMHMM:TMhelix	UniParc:UPI000254156F	UniProt:M4CJ06	MapMan:35.2	:	:

Description

AT1G66820 (E=1e-009) | glycine-rich protein

Coordinates

chrA07:+:17334305..17334688

Molecular Weight (calculated)

12898.5 Da

IEP (calculated)

8.190

GRAVY (calculated)

0.098

Length

127 amino acids

Sequence
(BLAST)

001: MKSDKLWSRS PVVKTGKSEF PVIRFVRGYL EKIKDITGGP GVGVGLGCGA GLGIGLTGGL GLDASEGLNH SNVVFGIGMG CGIGLGFGYG FGVGGGINFD
101: DIGDYLTYEK SSGSKSGSGK GFFSIDY

Best Arabidopsis Sequence Match ( AT1G66820.1 )
(BLAST)

001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL

Arabidopsis Description

Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.