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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 3
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004190.1-P Field mustard cytosol, nucleus, peroxisome 95.28 95.28
CDY52886 Canola cytosol, nucleus, peroxisome 92.13 93.6
CDY12589 Canola cytosol 65.35 74.11
CDY50603 Canola cytosol 65.35 74.11
AT1G66820.1 Thale cress cytosol, extracellular, nucleus 58.27 67.89
Protein Annotations
EnsemblPlants:CDX96125EnsemblPlantsGene:GSBRNA2T00102178001PANTHER:PTHR34201PANTHER:PTHR34201:SF2ProteinID:CDX96125ProteinID:CDX96125.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EEF449MapMan:35.2::
Description
BnaA07g26060D
Coordinates
chrLK031892:-:1181978..1182491
Molecular Weight (calculated)
12849.3 Da
IEP (calculated)
8.679
GRAVY (calculated)
0.017
Length
127 amino acids
Sequence
(BLAST)
001: MKSNKLWSRS PVVKTGKSEF PVISFVRGYL EKIKEKTGGP GVGGGLGCGA GLGIGLTGGL GLDASEGLNH SNVVFGIGMG CGIGFGFGYG FGVGGGINFD
101: DIGDYLTYEK SSGSKSGSGK GFFSIDY
Best Arabidopsis Sequence Match ( AT1G66820.1 )
(BLAST)
001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.