Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96125 | Canola | cytosol, mitochondrion, nucleus | 93.6 | 92.13 |
| CDY12589 | Canola | cytosol | 68.8 | 76.79 |
| CDY50603 | Canola | cytosol | 68.8 | 76.79 |
| AT1G66820.1 | Thale cress | cytosol, extracellular, nucleus | 58.4 | 66.97 |
Protein Annotations
| EnsemblPlants:CDY52886 | EnsemblPlantsGene:GSBRNA2T00008048001 | PANTHER:PTHR34201 | PANTHER:PTHR34201:SF2 | ProteinID:CDY52886 | ProteinID:CDY52886.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF375D | UniProt:A0A078IST0 | MapMan:35.2 | : |
Description
BnaC06g27790DBnaC06g27790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IST0]
Coordinates
chrLK033139:+:19027..19541
Molecular Weight (calculated)
12653.2 Da
IEP (calculated)
8.699
GRAVY (calculated)
0.069
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSDKLWSRS PVVKTGKSEF PVIRFIRGYL EKIKDITGGP GVGGGLGCGA GLGIGLTGGL GLDASEGLNH SNVVFGIGMG CGIGLGFGYG FGVGGGINFD
101: DIGDYLTYEK SSGSKSGSGK GFFFN
101: DIGDYLTYEK SSGSKSGSGK GFFFN
001: MGSTNKLWSR KPDVKTGKSE FPVTRFLRTQ IDNIKTTTVG PGIGGGIGCG AGIGIGLSGG LGIGASEGLD HSNVVLGFGI GCGIGFGFGY GFGVGGGYSF
101: DDIKERFDL
101: DDIKERFDL
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9C9N4]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.