CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039964.1-P	Field mustard	plastid	99.1	99.1
CDX99282	Canola	plastid	99.1	99.1
CDY31765	Canola	plastid	99.1	99.1
AT2G29125.1	Thale cress	plastid	92.79	89.57
CDY09914	Canola	plastid	77.48	78.9
CDY06263	Canola	plastid	74.77	78.3
KRG98477	Soybean	nucleus, plastid	46.85	69.33
KRH23099	Soybean	nucleus, plastid	57.66	65.31
KRH10233	Soybean	nucleus, plastid	57.66	65.31
KRH24763	Soybean	plastid	60.36	63.81
KRH29766	Soybean	plastid	54.05	58.25
CDY33045	Canola	nucleus	50.45	39.16
CDX80260	Canola	nucleus	50.45	39.16
CDY48681	Canola	cytosol, plastid	48.65	38.57
Solyc06g076320.1.1	Tomato	nucleus, plastid	39.64	36.36
CDY71167	Canola	nucleus	46.85	36.11
CDX68390	Canola	nucleus, plastid	46.85	36.11

Protein Annotations

EnsemblPlants:CDY42763	EnsemblPlantsGene:GSBRNA2T00075314001	InterPro:DVL	PANTHER:PTHR33102	PANTHER:PTHR33102:SF3	PFAM:PF08137
ProteinID:CDY42763	ProteinID:CDY42763.1	SEG:seg	UniParc:UPI0004EF37DF	UniProt:A0A078I0Z8	MapMan:11.10.1.6.1

Description

BnaA03g47760DBnaA03g47760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0Z8]

Coordinates

chrLK032533:+:193540..193875

Molecular Weight (calculated)

12311.5 Da

IEP (calculated)

11.294

GRAVY (calculated)

-0.778

Length

111 amino acids

Sequence
(BLAST)

001: MEEKWKLSKK ETTSSSSSKS KFSRSFSTSA SSAKSPLFAR SSSTKCSVPL SSSSSSSISR SFSRKERKSS SSPSSSITRK YSSLAKEQKA RFYIMRRCVA
101: MLVCWHKHGD S

Best Arabidopsis Sequence Match ( AT2G29125.1 )
(BLAST)

001: MEEKWKLSKK DTTASSSSSK SKFSRSFSTS ASSTKSPIFV RSSSTKCSVP SSSSSSSSSS SISRSFSRKE RRSSSSSSSS ITQKYSSLAK EQKARFYIMR
101: RCVAMLVCWH KHGDS

Arabidopsis Description

RTFL2RTFL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.