CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68390	Canola	nucleus, plastid	96.53	96.53
AT3G46613.1	Thale cress	nucleus, plastid	70.83	70.83
CDX80260	Canola	nucleus	60.42	60.84
CDY33045	Canola	nucleus	60.42	60.84
CDY48681	Canola	cytosol, plastid	59.03	60.71
KRH10233	Soybean	nucleus, plastid	34.72	51.02
CDY09914	Canola	plastid	37.5	49.54
CDY06263	Canola	plastid	36.11	49.06
KRH23099	Soybean	nucleus, plastid	33.33	48.98
CDY42763	Canola	plastid	36.11	46.85
KRG98477	Soybean	nucleus, plastid	24.31	46.67
CDX99282	Canola	plastid	35.42	45.95
CDY31765	Canola	plastid	35.42	45.95
KRH24763	Soybean	plastid	33.33	45.71
KRH29766	Soybean	plastid	31.25	43.69
Solyc06g076320.1.1	Tomato	nucleus, plastid	27.78	33.06

Protein Annotations

EnsemblPlants:CDY71167	EnsemblPlantsGene:GSBRNA2T00011778001	InterPro:DVL	PANTHER:PTHR33102	PANTHER:PTHR33102:SF3	PFAM:PF08137
ProteinID:CDY71167	ProteinID:CDY71167.1	SEG:seg	UniParc:UPI0004EE5A3F	UniProt:A0A078JZT1	MapMan:11.10.1.6.1

Description

BnaAnng36360DBnaAnng36360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZT1]

Coordinates

chrLK044757:+:1590..2087

Molecular Weight (calculated)

16261.3 Da

IEP (calculated)

10.817

GRAVY (calculated)

-0.654

Length

144 amino acids

Sequence
(BLAST)

001: MDVKKLRNFT EEDSILQTMY FSCSSSSSKH RSFSTKTLSS PSPESQFTRS FSTKALSSSS SSDPTFRRSF STKPKTSKSL FDLSRNSSTK CSSDLSSKSS
101: LSRCLSQKGA SVTQKWCRVA KEHKSRLYII KRCVLMLVCW HKHS

Best Arabidopsis Sequence Match ( AT3G46613.1 )
(BLAST)

001: MDVEKLWNHT KKDSIFQTTH FSSSSKPFFT RSFSTKTSSS PSSKSHFTRS FSTKPSSSSS SSDLIFRRSF SAKPKTSKSL LLSRSCSTKS SADLSSKSSS
101: LSRILSKKGA SVTGKCFKVA KEHKSRFYII KRCVLMLVCW HKHS

Arabidopsis Description

RTFL4DVL15 [Source:UniProtKB/TrEMBL;Acc:Q6IM86]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.