Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33045 | Canola | nucleus | 100.0 | 100.0 |
| CDY48681 | Canola | cytosol, plastid | 85.31 | 87.14 |
| AT5G59510.1 | Thale cress | nucleus | 82.52 | 81.94 |
| CDX68390 | Canola | nucleus, plastid | 60.84 | 60.42 |
| CDY71167 | Canola | nucleus | 60.84 | 60.42 |
| CDY06263 | Canola | plastid | 37.76 | 50.94 |
| CDY09914 | Canola | plastid | 38.46 | 50.46 |
| CDX99282 | Canola | plastid | 39.16 | 50.45 |
| CDY31765 | Canola | plastid | 39.16 | 50.45 |
| CDY42763 | Canola | plastid | 39.16 | 50.45 |
| KRH24763 | Soybean | plastid | 36.36 | 49.52 |
| KRH10233 | Soybean | nucleus, plastid | 33.57 | 48.98 |
| KRG98477 | Soybean | nucleus, plastid | 25.17 | 48.0 |
| KRH23099 | Soybean | nucleus, plastid | 32.87 | 47.96 |
| KRH29766 | Soybean | plastid | 32.17 | 44.66 |
| Solyc06g076320.1.1 | Tomato | nucleus, plastid | 28.67 | 33.88 |
Protein Annotations
| EnsemblPlants:CDX80260 | EnsemblPlantsGene:GSBRNA2T00133241001 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 | PFAM:PF08137 |
| ProteinID:CDX80260 | ProteinID:CDX80260.1 | ProteinID:CDY33045.1 | SEG:seg | UniParc:UPI0004EB07F9 | UniProt:A0A078H376 |
| MapMan:11.10.1.6.1 | : | : | : | : | : |
Description
BnaC09g34820DBnaA10g12510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H376]
Coordinates
chrLK031820:-:946084..946515
Molecular Weight (calculated)
16179.4 Da
IEP (calculated)
11.172
GRAVY (calculated)
-0.681
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDKKLWRVS KKDSIFETTH FSSKPDVFRR SFSTKTSSSS SSSKPILTRS FTTKPSSYPS SEPIFRRSFS AKPAPSKSPF LSRSGSMKCQ ADTSSTKCSI
101: SRSLSHKGAS VTRKCRDVAK EHKSRFYIIK RCVLMLVCWH KHA
101: SRSLSHKGAS VTRKCRDVAK EHKSRFYIIK RCVLMLVCWH KHA
001: MDDENLWKVV KKDSIFETTH FSSKPVFTRS FSTKTSSSSS KPVFTRSFST KPTSYSSSEP IFRRSFSAKP TSSKSPFLSR SGSTKCPVDT SSTSKCSISR
101: SLSQKGASVT RKCRNMAKEH KSRFYIMKRC VLMLVCWHKH ACDS
101: SLSQKGASVT RKCRNMAKEH KSRFYIMKRC VLMLVCWHKH ACDS
Arabidopsis Description
RTFL5At5g59510 [Source:UniProtKB/TrEMBL;Acc:Q8LE84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.