CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031578.1-P	Field mustard	plastid	97.25	100.0
CDY06263	Canola	plastid	97.25	100.0
AT1G07490.1	Thale cress	plastid	90.83	92.52
CDY42763	Canola	plastid	78.9	77.48
CDX99282	Canola	plastid	77.98	76.58
CDY31765	Canola	plastid	77.98	76.58
KRG98477	Soybean	nucleus, plastid	42.2	61.33
KRH10233	Soybean	nucleus, plastid	52.29	58.16
KRH23099	Soybean	nucleus, plastid	52.29	58.16
KRH24763	Soybean	plastid	55.96	58.1
KRH29766	Soybean	plastid	50.46	53.4
CDX80260	Canola	nucleus	50.46	38.46
CDY33045	Canola	nucleus	50.46	38.46
CDY48681	Canola	cytosol, plastid	48.62	37.86
CDX68390	Canola	nucleus, plastid	49.54	37.5
CDY71167	Canola	nucleus	49.54	37.5
Solyc06g076320.1.1	Tomato	nucleus, plastid	39.45	35.54

Protein Annotations

EnsemblPlants:CDY09914	EnsemblPlantsGene:GSBRNA2T00031677001	InterPro:DVL	PANTHER:PTHR33102	PANTHER:PTHR33102:SF3	PFAM:PF08137
ProteinID:CDY09914	ProteinID:CDY09914.1	SEG:seg	UniParc:UPI0004EC06FF	UniProt:A0A078FA77	MapMan:11.10.1.6.1

Description

BnaC08g45370DBnaC08g45370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA77]

Coordinates

chrLK032000:+:55175..55569

Molecular Weight (calculated)

11829.8 Da

IEP (calculated)

10.791

GRAVY (calculated)

-0.750

Length

109 amino acids

Sequence
(BLAST)

001: MDEKWKLSKK DASAASCSSS SSSKSKFSRS YSTSASSTKA PAFVRSSSTK CSVPSSSSSI SRSSSKKEKG SSSSSITQKY SSLAKEQKGR FYIMRRCVAM
101: LVCWHKHDS

Best Arabidopsis Sequence Match ( AT1G07490.1 )
(BLAST)

001: MDEKWRLSKK DALAASCSSS STSSKSKFSR SFSTSASSSK APAFVRSSST KCSVPSSSSS SISRSSSKKE KGSITQKYSS LAKEQKGRFY IMRRCVAMLV
101: CWHKHDS

Arabidopsis Description

RTFL3RTFL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1R5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.