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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031578.1-P Field mustard plastid 100.0 100.0
CDY09914 Canola plastid 100.0 97.25
AT1G07490.1 Thale cress plastid 90.57 89.72
CDY42763 Canola plastid 78.3 74.77
CDX99282 Canola plastid 77.36 73.87
CDY31765 Canola plastid 77.36 73.87
KRG98477 Soybean nucleus, plastid 43.4 61.33
KRH24763 Soybean plastid 56.6 57.14
KRH10233 Soybean nucleus, plastid 51.89 56.12
KRH23099 Soybean nucleus, plastid 51.89 56.12
KRH29766 Soybean plastid 50.0 51.46
CDX80260 Canola nucleus 50.94 37.76
CDY33045 Canola nucleus 50.94 37.76
CDY48681 Canola cytosol, plastid 49.06 37.14
CDX68390 Canola nucleus, plastid 49.06 36.11
CDY71167 Canola nucleus 49.06 36.11
Solyc06g076320.1.1 Tomato nucleus, plastid 39.62 34.71
Protein Annotations
EnsemblPlants:CDY06263EnsemblPlantsGene:GSBRNA2T00122181001InterPro:DVLPANTHER:PTHR33102PANTHER:PTHR33102:SF3PFAM:PF08137
ProteinID:CDY06263ProteinID:CDY06263.1SEG:segUniParc:UPI00025433DFMapMan:11.10.1.6.1:
Description
BnaA09g49400D
Coordinates
chrLK031968:-:518908..519285
Molecular Weight (calculated)
11568.6 Da
IEP (calculated)
10.791
GRAVY (calculated)
-0.749
Length
106 amino acids
Sequence
(BLAST)
001: MDEKWKLSKK DASAASCSSS SSSKSKFSRS YSTSASSTKA PAFVRSSSTK CSVPSSISRS SSKKEKGSSS SSITQKYSSL AKEQKGRFYI MRRCVAMLVC
101: WHKHDS
Best Arabidopsis Sequence Match ( AT1G07490.1 )
(BLAST)
001: MDEKWRLSKK DALAASCSSS STSSKSKFSR SFSTSASSSK APAFVRSSST KCSVPSSSSS SISRSSSKKE KGSITQKYSS LAKEQKGRFY IMRRCVAMLV
101: CWHKHDS
Arabidopsis Description
RTFL3RTFL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1R5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.