CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80260	Canola	nucleus	87.14	85.31
CDY33045	Canola	nucleus	87.14	85.31
AT5G59510.1	Thale cress	nucleus	82.14	79.86
CDX68390	Canola	nucleus, plastid	60.71	59.03
CDY71167	Canola	nucleus	60.71	59.03
KRH10233	Soybean	nucleus, plastid	35.0	50.0
KRH24763	Soybean	plastid	37.14	49.52
CDY06263	Canola	plastid	37.14	49.06
KRH23099	Soybean	nucleus, plastid	34.29	48.98
CDX99282	Canola	plastid	38.57	48.65
CDY31765	Canola	plastid	38.57	48.65
CDY42763	Canola	plastid	38.57	48.65
CDY09914	Canola	plastid	37.86	48.62
KRG98477	Soybean	nucleus, plastid	25.71	48.0
KRH29766	Soybean	plastid	33.57	45.63
Solyc06g076320.1.1	Tomato	nucleus, plastid	30.71	35.54

Protein Annotations

EnsemblPlants:CDY48681	EnsemblPlantsGene:GSBRNA2T00091554001	InterPro:DVL	PANTHER:PTHR33102	PANTHER:PTHR33102:SF3	PFAM:PF08137
ProteinID:CDY48681	ProteinID:CDY48681.1	SEG:seg	UniParc:UPI0004EEA1A7	UniProt:A0A078IF91	MapMan:11.10.1.6.1

Description

BnaC02g09930DBnaC02g09930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF91]

Coordinates

chrLK032786:-:64614..65036

Molecular Weight (calculated)

15700.8 Da

IEP (calculated)

11.046

GRAVY (calculated)

-0.599

Length

140 amino acids

Sequence
(BLAST)

001: MDDIKLCRVS KKDSIFETTH FSSKSDVFRR SFSTKPSSSS KPILPRSFST KPTSYSSSEP IFRRSFSAKP TPSKPAFLSR SGSTKGQADT SSTKCSISRS
101: LSQKGASVTR KCCNVAKEHK SRFYILKRCV FMLVCWHKHA

Best Arabidopsis Sequence Match ( AT5G59510.1 )
(BLAST)

001: MDDENLWKVV KKDSIFETTH FSSKPVFTRS FSTKTSSSSS KPVFTRSFST KPTSYSSSEP IFRRSFSAKP TSSKSPFLSR SGSTKCPVDT SSTSKCSISR
101: SLSQKGASVT RKCRNMAKEH KSRFYIMKRC VLMLVCWHKH ACDS

Arabidopsis Description

RTFL5At5g59510 [Source:UniProtKB/TrEMBL;Acc:Q8LE84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.