Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09914 | Canola | plastid | 92.52 | 90.83 |
| Bra031578.1-P | Field mustard | plastid | 89.72 | 90.57 |
| CDY06263 | Canola | plastid | 89.72 | 90.57 |
| Bra030686.1-P | Field mustard | plastid | 86.92 | 86.11 |
| AT2G29125.1 | Thale cress | plastid | 81.31 | 75.65 |
| KRG98477 | Soybean | nucleus, plastid | 42.06 | 60.0 |
| KRH23099 | Soybean | nucleus, plastid | 54.21 | 59.18 |
| KRH10233 | Soybean | nucleus, plastid | 53.27 | 58.16 |
| KRH24763 | Soybean | plastid | 57.01 | 58.1 |
| KRH29766 | Soybean | plastid | 51.4 | 53.4 |
| AT3G46613.1 | Thale cress | nucleus, plastid | 55.14 | 40.97 |
| AT5G59510.1 | Thale cress | nucleus | 55.14 | 40.97 |
| Solyc06g076320.1.1 | Tomato | nucleus, plastid | 42.99 | 38.02 |
Protein Annotations
| MapMan:11.10.1.6.1 | EntrezGene:837263 | UniProt:A0A178W1R5 | ProteinID:AEE28135.1 | ArrayExpress:AT1G07490 | EnsemblPlantsGene:AT1G07490 |
| RefSeq:AT1G07490 | TAIR:AT1G07490 | RefSeq:AT1G07490-TAIR-G | EnsemblPlants:AT1G07490.1 | TAIR:AT1G07490.1 | Unigene:At.42298 |
| EMBL:BK001752 | EMBL:BT024668 | InterPro:DVL | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0048367 |
| RefSeq:NP_172229.2 | ProteinID:OAP12208.1 | PFAM:PF08137 | PO:PO:0000293 | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 |
| UniProt:Q6IM92 | Symbol:RTFL3 | UniParc:UPI0000196B60 | SEG:seg | : | : |
Description
RTFL3RTFL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1R5]
Coordinates
chr1:-:2301380..2302021
Molecular Weight (calculated)
11693.7 Da
IEP (calculated)
10.936
GRAVY (calculated)
-0.674
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKWRLSKK DALAASCSSS STSSKSKFSR SFSTSASSSK APAFVRSSST KCSVPSSSSS SISRSSSKKE KGSITQKYSS LAKEQKGRFY IMRRCVAMLV
101: CWHKHDS
101: CWHKHDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.