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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031578.1-P Field mustard plastid 88.89 90.57
AT1G07490.1 Thale cress plastid 86.11 86.92
Bra039964.1-P Field mustard plastid 77.78 75.68
KRG98477 Soybean nucleus, plastid 42.59 61.33
KRH24763 Soybean plastid 58.33 60.0
KRH10233 Soybean nucleus, plastid 52.78 58.16
KRH23099 Soybean nucleus, plastid 52.78 58.16
KRH29766 Soybean plastid 52.78 55.34
Solyc06g076320.1.1 Tomato nucleus, plastid 38.89 34.71
Protein Annotations
EnsemblPlants:Bra030686.1EnsemblPlants:Bra030686.1-PEnsemblPlantsGene:Bra030686InterPro:DVLPANTHER:PTHR33102PANTHER:PTHR33102:SF3
PFAM:PF08137SEG:segUniParc:UPI0002546D68UniProt:M4EPG6MapMan:11.10.1.6.1:
Description
AT1G07490 (E=4e-011) RTFL3, DVL9 | RTFL3 (ROTUNDIFOLIA LIKE 3)
Coordinates
chrA08:+:20804822..20805148
Molecular Weight (calculated)
11694.7 Da
IEP (calculated)
10.985
GRAVY (calculated)
-0.694
Length
108 amino acids
Sequence
(BLAST)
001: MSEKWKLSKK DASSASCSSS SSSKSKFSRS FSTSASSTKA PALVRSSSTK CSVPSSSSSI SRSTSKKEKG SSSSITQKYS SIAKEQKGRF YIMRRCVAML
101: VCWHKHDS
Best Arabidopsis Sequence Match ( AT1G07490.1 )
(BLAST)
001: MDEKWRLSKK DALAASCSSS STSSKSKFSR SFSTSASSSK APAFVRSSST KCSVPSSSSS SISRSSSKKE KGSITQKYSS LAKEQKGRFY IMRRCVAMLV
101: CWHKHDS
Arabidopsis Description
RTFL3RTFL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1R5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.