Factsheet for GSMUA_Achr1P17630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT4G27460.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plastid	71.54	71.54
GSMUA_Achr3P14310_001	Banana	cytosol	67.95	70.48
GSMUA_Achr2P18550_001	Banana	cytosol	54.1	54.1
GSMUA_Achr11P...	Banana	cytosol	50.26	50.65
KRH27215	Soybean	cytosol	48.72	48.72
KRH22128	Soybean	plastid	47.95	48.07
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	47.69	47.21
VIT_00s0587g00030.t01	Wine grape	cytosol	46.41	47.14
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	45.9	45.2
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	45.64	44.95
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	43.33	43.67
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	43.33	43.67
KRH10848	Soybean	cytosol	42.56	43.57
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	42.82	43.26
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	41.54	42.63
KRH21471	Soybean	cytosol	43.33	42.46
Solyc02g078480.2.1	Tomato	cytosol	43.59	41.98
PGSC0003DMT400057642	Potato	cytosol	43.33	41.94
TraesCS2D01G599900.1	Wheat	cytosol	41.03	41.88
PGSC0003DMT400058761	Potato	mitochondrion	41.79	41.48
PGSC0003DMT400033347	Potato	cytosol	42.31	41.35
AT4G27460.1	Thale cress	plastid	41.03	40.92
CDY53481	Canola	cytosol	42.31	40.84
TraesCSU01G021400.1	Wheat	cytosol	40.0	40.84
CDY66674	Canola	cytosol	42.56	40.49
Solyc10g009010.2.1	Tomato	cytosol	40.77	40.46
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	23.33	40.44
Solyc03g006470.2.1	Tomato	cytosol	41.28	40.25
CDX96240	Canola	cytosol	41.03	39.9
CDY28817	Canola	cytosol	38.97	39.58
AT5G53750.1	Thale cress	cytosol	40.77	38.97
Bra022672.1-P	Field mustard	cytosol	35.9	37.63
Bra029056.1-P	Field mustard	cytosol	41.28	33.97
Os04t0679600-01	Rice	nucleus	29.49	28.47
GSMUA_Achr10P...	Banana	cytosol	22.05	22.69
GSMUA_AchrUn_...	Banana	cytosol	23.59	20.81
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	22.56	20.42

Protein Annotations

EnsemblPlants:GSMUA_Achr1P17630_001	EnsemblPlants:GSMUA_Achr1T17630_001	EnsemblPlantsGene:GSMUA_Achr1G17630_001	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	UniParc:UPI000296311A
UniProt:M0S0S1	MapMan:35.1	:	:	:	:

Description

cystathionin beta synthase protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G17630_001]

Coordinates

chr1:+:13117809..13119179

Molecular Weight (calculated)

41538.9 Da

IEP (calculated)

5.462

GRAVY (calculated)

0.207

Length

390 amino acids

Sequence
(BLAST)

001: MAVSWLQDRE VADLCIGKPP TRPIPLSATV GDALLALRNA GADDRLAVWA ADRAAPERRA CVGKVCMVDV ICYLCAEENL DAPCAALGAP VSAFLFPKAA
101: APPVRRVEPS SSILEALDAI FDGVQSLVVP IRAAASRRKL AGGGGSAEFC WLTQEDFLRF FLNSIFLFSP VPALSVSDLG LVRPAALTVR HQDPALCALP
201: LIRAALTEQT SVAVISNNGH LVGEISPSTL AHLDERVAAA LAALSAGELT AYIDCSGTLP ESATRSIKAR LREKGLLGML ELLEADFSPP FSPTTSCSSS
301: SSSDDESSPS AAPSNCRRPR RLRSVGSYSA RMGRQSEEAI VCHPWSSLVA VMIQASTHRV GYVWVVDDDY FLVGMVTLSD MLKVFREQLA

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.