Factsheet for AT5G53750.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66674	Canola	cytosol	79.66	79.27
CDY53481	Canola	cytosol	77.94	78.71
CDY28817	Canola	cytosol	69.85	74.22
CDX96240	Canola	cytosol	72.79	74.06
Bra022672.1-P	Field mustard	cytosol	65.93	72.31
AT4G27460.1	Thale cress	plastid	62.99	65.73
Bra029056.1-P	Field mustard	cytosol	73.53	63.29
KRH22128	Soybean	plastid	49.02	51.41
KRH27215	Soybean	cytosol	48.77	51.03
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	48.77	50.51
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	46.57	47.98
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	45.34	46.72
GSMUA_AchrUn_...	Banana	cytosol, plastid	42.4	44.36
GSMUA_Achr3P14310_001	Banana	cytosol	39.46	42.82
GSMUA_Achr2P18550_001	Banana	cytosol	40.44	42.31
GSMUA_Achr11P...	Banana	cytosol	38.73	40.83
GSMUA_Achr1P17630_001	Banana	cytosol	38.97	40.77
TraesCS1A01G170000.1	Wheat	plastid	37.25	40.75
TraesCS1B01G187200.1	Wheat	plastid	37.25	40.75
TraesCS1D01G167600.1	Wheat	plastid	37.01	40.48
Zm00001d013933_P001	Maize	cytosol, plastid	36.52	39.84
KXG38242	Sorghum	plastid	36.76	39.37
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	26.96	39.01
Zm00001d032560_P001	Maize	plastid	35.78	38.93
TraesCS6D01G218300.1	Wheat	plastid	33.82	35.84
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	19.61	35.56
TraesCS6B01G264200.1	Wheat	plastid	33.58	35.31
TraesCS6A01G235600.1	Wheat	plastid	33.58	35.04
HORVU6Hr1G060370.2	Barley	plastid	33.82	34.94
EES05487	Sorghum	plastid	34.31	34.31
Zm00001d017375_P001	Maize	plastid	34.56	34.06
TraesCSU01G021400.1	Wheat	cytosol	30.88	32.98
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	30.64	32.89
TraesCS2D01G599900.1	Wheat	cytosol	30.15	32.2
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	36.76	31.06
AT1G65320.1	Thale cress	cytosol	22.55	21.65
Os04t0679600-01	Rice	nucleus	20.59	20.79

Protein Annotations

Gene3D:3.10.580.10	MapMan:35.1	EntrezGene:835456	ProteinID:AED96402.1	ArrayExpress:AT5G53750	EnsemblPlantsGene:AT5G53750
RefSeq:AT5G53750	TAIR:AT5G53750	RefSeq:AT5G53750-TAIR-G	EnsemblPlants:AT5G53750.1	TAIR:AT5G53750.1	InterPro:CBS_dom
UniProt:F4JXB6	GO:GO:0006950	GO:GO:0008150	GO:GO:0009611	InterPro:IPR000644	RefSeq:NP_200186.2
PFAM:PF00571	PO:PO:0000293	PO:PO:0001016	PO:PO:0025195	PO:PO:0025281	PFscan:PS51371
PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	SUPFAM:SSF54631	UniParc:UPI00005DC29F	SEG:seg	:

Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]

Coordinates

chr5:+:21817128..21818958

Molecular Weight (calculated)

43796.9 Da

IEP (calculated)

5.103

GRAVY (calculated)

0.269

Length

408 amino acids

Sequence
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.