Factsheet for TraesCS6D01G218300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G264200.1	Wheat	plastid	96.1	95.36
TraesCS6A01G235600.1	Wheat	plastid	95.32	93.86
HORVU6Hr1G060370.2	Barley	plastid	92.21	89.87
EES05487	Sorghum	plastid	69.35	65.44
Zm00001d017375_P001	Maize	plastid	68.83	64.01
TraesCS1D01G167600.1	Wheat	plastid	44.94	46.38
GSMUA_Achr2P18550_001	Banana	cytosol	44.16	43.59
GSMUA_Achr11P...	Banana	cytosol	41.82	41.6
KRH22128	Soybean	plastid	38.18	37.79
VIT_00s0587g00030.t01	Wine grape	cytosol	37.66	37.76
KRH27215	Soybean	cytosol	38.18	37.69
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	38.18	37.31
CDY53481	Canola	cytosol	38.44	36.63
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	36.1	35.92
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	36.1	35.92
TraesCS2D01G599900.1	Wheat	cytosol	35.58	35.86
CDY66674	Canola	cytosol	37.66	35.37
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	35.32	35.23
AT4G27460.1	Thale cress	plastid	35.58	35.04
PGSC0003DMT400057642	Potato	cytosol	36.36	34.74
KRH21471	Soybean	cytosol	35.84	34.67
CDX96240	Canola	cytosol	36.1	34.66
KRH10848	Soybean	cytosol	34.29	34.65
Solyc02g078480.2.1	Tomato	cytosol	36.36	34.57
CDY28817	Canola	cytosol	34.29	34.38
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	34.81	33.84
AT5G53750.1	Thale cress	cytosol	35.84	33.82
Solyc10g009010.2.1	Tomato	cytosol	34.29	33.59
PGSC0003DMT400058761	Potato	mitochondrion	34.29	33.59
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	34.55	33.59
PGSC0003DMT400033347	Potato	cytosol	34.81	33.58
Bra022672.1-P	Field mustard	cytosol	31.95	33.06
Solyc03g006470.2.1	Tomato	cytosol	32.73	31.5
Bra029056.1-P	Field mustard	cytosol	36.1	29.32
TraesCS3D01G422700.1	Wheat	cytosol	23.38	22.61
TraesCS7D01G259800.1	Wheat	plastid	23.38	22.33

Protein Annotations

EnsemblPlants:TraesCS6D01G218300.1	EnsemblPlantsGene:TraesCS6D01G218300	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF56
PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr6D:+:308590672..308591979

Molecular Weight (calculated)

40073.0 Da

IEP (calculated)

5.649

GRAVY (calculated)

0.363

Length

385 amino acids

Sequence
(BLAST)

001: MAASILSHVV SDLCIGKPAV RVLPPSTPIA AALATLRAGA DPFVFVDAAP PDAKKTAVLS VVKVSVAEIL CYVCGDGGNL SDPAAALGRP VSVLTAVVGD
101: HGVTRQVDPQ TSLLDAIDAL LANNSHSLVV PLHARARKKH HHVSAGYCVL TQQDIVRHLF GSISLFSPVA ALSVSSLGLV RRDDVHAVHV DDDALDAIPL
201: LRRSIGQGTA VAVVADDDAL VGEICPGVLG SCDDVESVSA AFATLSAGDA MTYIDCYFSP PEFLLRSIRA ELTGKGLHAM CDLMDAAYTT DVGALSSSST
301: SSDEECLPLA PARRARKMSS GSFRWRSTED VAACHAESSL VAVMAQALAH RVGHVWVVDE LSGALVGVVS CADVLAVLRD HLRPE

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.