Factsheet for TraesCS6A01G235600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G264200.1	Wheat	plastid	94.88	95.62
TraesCS6D01G218300.1	Wheat	plastid	93.86	95.32
HORVU6Hr1G060370.2	Barley	plastid	91.82	90.89
EES05487	Sorghum	plastid	67.77	64.95
Zm00001d017375_P001	Maize	plastid	67.26	63.53
TraesCS1A01G170000.1	Wheat	plastid	43.99	46.11
GSMUA_Achr2P18550_001	Banana	cytosol	42.97	43.08
GSMUA_Achr11P...	Banana	cytosol	40.41	40.83
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	36.06	37.11
KRH22128	Soybean	plastid	36.83	37.02
VIT_00s0587g00030.t01	Wine grape	cytosol	36.32	36.98
KRH27215	Soybean	cytosol	36.83	36.92
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	37.08	36.8
CDY53481	Canola	cytosol	36.83	35.64
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	35.04	35.4
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	35.04	35.4
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	34.27	34.72
CDY66674	Canola	cytosol	36.06	34.39
AT4G27460.1	Thale cress	plastid	34.02	34.02
PGSC0003DMT400057642	Potato	cytosol	35.04	33.99
KRH10848	Soybean	cytosol	32.99	33.86
Solyc02g078480.2.1	Tomato	cytosol	35.04	33.83
KRH21471	Soybean	cytosol	34.27	33.67
CDX96240	Canola	cytosol	34.53	33.67
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	34.02	33.59
AT5G53750.1	Thale cress	cytosol	35.04	33.58
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	33.76	33.33
PGSC0003DMT400033347	Potato	cytosol	34.02	33.33
CDY28817	Canola	cytosol	32.48	33.07
Solyc10g009010.2.1	Tomato	cytosol	32.74	32.57
PGSC0003DMT400058761	Potato	mitochondrion	32.74	32.57
Bra022672.1-P	Field mustard	cytosol	30.43	31.99
Solyc03g006470.2.1	Tomato	cytosol	31.97	31.25
Bra029056.1-P	Field mustard	cytosol	34.53	28.48
TraesCS3A01G427100.1	Wheat	cytosol	23.79	23.37
TraesCS7A01G258900.1	Wheat	plastid	23.79	23.08

Protein Annotations

EnsemblPlants:TraesCS6A01G235600.1	EnsemblPlantsGene:TraesCS6A01G235600	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF56
PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr6A:+:445304406..445305730

Molecular Weight (calculated)

40697.7 Da

IEP (calculated)

5.633

GRAVY (calculated)

0.361

Length

391 amino acids

Sequence
(BLAST)

001: MAASILSHVV SDLCIGKPAV RVLPPSTPIA AALATLRAGA DPFVFVDAAP PDAKKAAALS VVKVSVAEIL CYVCGDGGNL GDPAAALRRP VSVLTAVVGD
101: HGVTRRVDPQ TSLLDAIDAL LANNSHSLLV PLHARARKKH HHASAGYCVL TQQDIVRHLF GSISLFAPVA ALSVASLGLV RRDDAHAVHV DDDALDAIPL
201: LQRSIGHGTA VAVVADDDAL VGEICPGVLG SCDDVESVSA AFAALSAGDA MTYIDCYFSP PEFLLRSIRA ELTDKGLHAM CDLMDAAYTT DVAALSSSST
301: SSDEECLPLA PARRARKMSS GSFRWRSTED VAACHAGSSL VAVMAQALAH RVGHVWVIDE LTGALVGVVS CADVLAVLRD HLRPECYADD L

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.