CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69443
CDX85500
CDY28659
CDY38105
CDY67252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18580.1	CDX69443	AT5G16560.1	21798944
AT5G18580.1	CDX85500	AT5G16560.1	21798944
AT5G18580.1	CDY28659	AT5G16560.1	21798944
AT5G18580.1	CDY38105	AT5G16560.1	21798944
AT5G18580.1	CDY67252	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70827	Canola	nucleus	94.9	98.73
CDY58103	Canola	nucleus	95.92	97.51
CDY02615	Canola	nucleus	93.06	94.61
AT5G18580.1	Thale cress	nucleus	91.84	93.75
CDX92599	Canola	nucleus	87.76	89.58
Solyc01g067500.2.1	Tomato	cytosol	86.94	89.12
VIT_05s0020g01710.t01	Wine grape	cytosol	85.51	88.03
KRH02218	Soybean	cytosol	84.9	87.21
KRH50907	Soybean	cytosol	84.69	87.0
GSMUA_Achr1P14730_001	Banana	cytosol	84.08	84.43
TraesCS1D01G098600.1	Wheat	cytosol, plastid	83.06	83.74
TraesCS1B01G118200.1	Wheat	cytosol, plastid	83.06	83.74
TraesCS1A01G090100.1	Wheat	cytosol, plastid	83.06	83.74
EES17718	Sorghum	nucleus, plastid	83.67	83.67
CDY13902	Canola	cytosol	74.49	81.66
Zm00001d010862_P002	Maize	nucleus, plastid	81.84	81.34
Zm00001d024857_P002	Maize	cytosol	81.02	79.4
GSMUA_Achr9P20260_001	Banana	cytosol, mitochondrion	17.55	66.67
GSMUA_Achr9P20250_001	Banana	extracellular, golgi	35.51	55.59
CDY71370	Canola	extracellular	11.43	23.33
CDX86212	Canola	cytosol	20.41	18.59
CDY48668	Canola	cytosol	20.41	18.59
CDY15483	Canola	cytosol	19.8	18.16
CDY13127	Canola	cytosol	19.59	18.05
CDY36971	Canola	cytosol	19.39	17.92
CDY57012	Canola	cytosol	19.59	17.88
CDX86655	Canola	cytosol	19.18	17.84
CDY44814	Canola	cytosol	19.18	17.41
CDY00020	Canola	cytosol	18.98	17.19

Protein Annotations

Gene3D:1.10.238.10	MapMan:13.4.1.2.5	MapMan:18.4.24.1.2.4	GO:A0A078DI80	EnsemblPlants:CDX88930	ProteinID:CDX88930
ProteinID:CDX88930.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00149027001	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR12085	PANTHER:PTHR12085:SF3	SUPFAM:SSF47473	UniParc:UPI0004EED306	SEG:seg

Description

BnaA03g07190D

Coordinates

chrLK031856:-:1652340..1655389

Molecular Weight (calculated)

56392.8 Da

IEP (calculated)

4.580

GRAVY (calculated)

-0.492

Length

490 amino acids

Sequence
(BLAST)

001: MYSGSSDGES HDTTTQRRIP PASSMLWVRN LRRYIGSGAG LGSEALMELE TKRILLEIFK DKQQKSQEAG TIPSFYKKAW LFYSNKMFKP EEGSISQRVQ
101: RLAKYRFLKK QSDLLLNSDD LAAMWNCLRE NCVIDDGTGA EKMNYEDFCH IASVCTEQIG PKCRRFFSPS NFMKFEKDEA GRIAILPFYL YVMRTVSLTQ
201: ARIDMSELDE DSDGFLQSQE MESYISGLIP NLAQLRDMPD AFTNMYCRIA SQKFFFFCDP HRRGKACIKK ILLSNCLQEL MELHQESEEE VTDTEQAENW
301: FSLTSAQRIC DMFLALDKDC SGSLSKQELK EYADGTLTEI FIERVFDEHV RRGKSGSGNS REMDFDSFLD FVLALENKDT PEGLTYLFRC LDLQGRGFLT
401: TADIHSLFRD VHQKWIEGGN YELCIEDVRD EIWDMVKPSD PLKITLDDLL GCKQGGTVAS MLIDVRGFWA HDNRENLLQE EEEPPEEESQ

Best Arabidopsis Sequence Match ( AT5G18580.1 )
(BLAST)

001: MYSGSSDGES HDTSTQRKIP PASSMLWVRN LRRYIGSGAG LGSEALMELE TKRILLEIFK EKQQKSQEAG TIPSFYKKKP EEGSISQRVQ KLAKYRFLKK
101: QSDLLLNADD LAAMWVCLRE NCVIDDATGA EKMNYEDFCH IASVCTEQIG PKCRRFFSPS NFMKFEKDEA GRIAILPFYL YVMRTVSLTQ ARIDMSELDE
201: DSDGFLHSDE MESYIGGLIP NLAQLRDMPP AFNQMYCRIA SQKFFFFCDP HRRGRACIKK ILLSNCLQEL MELHQESEEE VTDTEQAENW FSLTSAQRIC
301: DMFLALDKDM SGSLCKQELK EYADGTLTEI FIERVFDEHV RRGKIVAGNS REMDFDSFLD FVLALENKDT PEGLTYLFRC LDLQGRGFLT TADIHSLFRD
401: VHQKWIEGGN YELCIEDVRD EIWDMVKPSD PLKITLGDLL GCKQGGTVAS MLIDVRGFWA HDNRENLLQE EEEPPEEESQ

Arabidopsis Description

TON2Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FEE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.