CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69443
CDX85500
CDY28659
CDY38105
CDY67252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18580.1	CDX69443	AT5G16560.1	21798944
AT5G18580.1	CDX85500	AT5G16560.1	21798944
AT5G18580.1	CDY28659	AT5G16560.1	21798944
AT5G18580.1	CDY38105	AT5G16560.1	21798944
AT5G18580.1	CDY67252	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92599	Canola	nucleus	89.04	82.92
AT5G18580.1	Thale cress	nucleus	81.66	76.04
CDY58103	Canola	nucleus	81.43	75.52
CDX70827	Canola	nucleus	78.97	74.95
CDY02615	Canola	nucleus	80.76	74.9
CDX88930	Canola	nucleus	81.66	74.49
Solyc01g067500.2.1	Tomato	cytosol	77.18	72.18
KRH02218	Soybean	cytosol	76.73	71.91
VIT_05s0020g01710.t01	Wine grape	cytosol	76.29	71.64
KRH50907	Soybean	cytosol	75.17	70.44
TraesCS1D01G098600.1	Wheat	cytosol, plastid	76.51	70.37
TraesCS1B01G118200.1	Wheat	cytosol, plastid	76.51	70.37
TraesCS1A01G090100.1	Wheat	cytosol, plastid	76.51	70.37
GSMUA_Achr1P14730_001	Banana	cytosol	76.29	69.88
EES17718	Sorghum	nucleus, plastid	76.51	69.8
Zm00001d024857_P002	Maize	cytosol	76.51	68.4
Zm00001d010862_P002	Maize	nucleus, plastid	74.72	67.75
GSMUA_Achr9P20250_001	Banana	extracellular, golgi	36.24	51.76
GSMUA_Achr9P20260_001	Banana	cytosol, mitochondrion	13.2	45.74
CDY71370	Canola	extracellular	12.3	22.92
CDX86212	Canola	cytosol	21.25	17.66
CDY48668	Canola	cytosol	21.25	17.66
CDX86655	Canola	cytosol	20.58	17.46
CDY15483	Canola	cytosol	20.81	17.42
CDY13127	Canola	cytosol	20.58	17.29
CDY44814	Canola	cytosol	20.58	17.04
CDY36971	Canola	cytosol	20.13	16.98
CDY57012	Canola	cytosol	20.13	16.76
CDY00020	Canola	cytosol	19.91	16.45

Protein Annotations

Gene3D:1.10.238.10	MapMan:13.4.1.2.5	MapMan:18.4.24.1.2.4	GO:A0A078FLP6	UniProt:A0A078FLP6	EnsemblPlants:CDY13902
ProteinID:CDY13902	ProteinID:CDY13902.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00078364001	InterPro:IPR002048	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR12085	PANTHER:PTHR12085:SF3	SUPFAM:SSF47473	UniParc:UPI0004EDBE69
SEG:seg	:	:	:	:	:

Description

BnaC09g39240DBnaC09g39240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLP6]

Coordinates

chrLK032039:+:63665..66830

Molecular Weight (calculated)

51629.6 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.437

Length

447 amino acids

Sequence
(BLAST)

001: MIGPKIMENM IKDSGAGLGS EALMELEIKR IFFEIFKEKQ LKSQESGTIP SFYKKKPEEG SISQRFQKLA KYRFLKKQSD LLLNSDDLDA LWNCLRENCV
101: IDDATGAEKT SVTLPLYVLN KCRQFFSPSN FMKFVKDDAG RIAILPFYLY VLRTVSLTQA RIDMSEHDQD SDGFLLSTQE MESYIMGLIP NLAQLRDMLE
201: TFRQMYCRIA AQKFFFFCDP HRRGKACIKK ILLGNCLQEL MELHQESEEE VTETEQAENW FSLTSAQRVC DMFDKDASGS LSKQELKEYA DGTLTEIFIE
301: RVFDEHVRRG KSSRVNSREM DFDSFLDFVL ALENKDTPEG LTYLFRCLDL QGRGFLTTAD IHSLFRDVHK KWIEGGNYEL CIEDVRDEIW DMGKPSDPLK
401: ITLNDLLGCK QGGTVASMLI DVRGFWAHDN RENLLQEEEE PPEEESQ

Best Arabidopsis Sequence Match ( AT5G18580.1 )
(BLAST)

001: MYSGSSDGES HDTSTQRKIP PASSMLWVRN LRRYIGSGAG LGSEALMELE TKRILLEIFK EKQQKSQEAG TIPSFYKKKP EEGSISQRVQ KLAKYRFLKK
101: QSDLLLNADD LAAMWVCLRE NCVIDDATGA EKMNYEDFCH IASVCTEQIG PKCRRFFSPS NFMKFEKDEA GRIAILPFYL YVMRTVSLTQ ARIDMSELDE
201: DSDGFLHSDE MESYIGGLIP NLAQLRDMPP AFNQMYCRIA SQKFFFFCDP HRRGRACIKK ILLSNCLQEL MELHQESEEE VTDTEQAENW FSLTSAQRIC
301: DMFLALDKDM SGSLCKQELK EYADGTLTEI FIERVFDEHV RRGKIVAGNS REMDFDSFLD FVLALENKDT PEGLTYLFRC LDLQGRGFLT TADIHSLFRD
401: VHQKWIEGGN YELCIEDVRD EIWDMVKPSD PLKITLGDLL GCKQGGTVAS MLIDVRGFWA HDNRENLLQE EEEPPEEESQ

Arabidopsis Description

TON2Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FEE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.