CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRG93305
KRG95394
KRH16959
KRH24006
KRH27971
KRH29310
KRH34357
KRH53667
KRH56614
KRH64261
KRH67075
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	KRG93305	AT3G27960.1	21798944
AT1G19680.1	KRH56614	AT3G27960.1	21798944
AT1G19680.1	KRG95394	AT5G22355.1	21798944
AT1G19680.1	KRH67075	AT5G22355.1	21798944
AT1G75400.1	KRG92440	AT3G22960.1	21798944
AT1G75400.1	KRH34357	AT3G22960.1	21798944
AT1G75400.1	KRH24006	AT3G48150.1	21798944
AT1G75400.1	KRH27971	AT3G48150.1	21798944
AT1G75400.1	KRH29310	AT3G48150.1	21798944
AT1G75400.1	KRH77487	AT3G48150.1	21798944
AT1G75400.1	KRH16959	AT3G49580.1	21798944
AT1G75400.1	KRH53667	AT3G49580.1	21798944
AT1G75400.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05863	Soybean	nucleus	95.85	95.85
KRH51797	Soybean	nucleus	77.19	77.55
KRH61121	Soybean	plastid	78.8	77.2
VIT_18s0001g13060.t01	Wine grape	nucleus	70.51	69.07
KRH51493	Soybean	nucleus	47.7	47.59
KRH60799	Soybean	nucleus, plastid	47.47	47.36
AT1G75400.1	Thale cress	plastid	49.54	47.25
CDY69665	Canola	nucleus, plastid	49.77	46.55
CDY47525	Canola	nucleus, plastid	49.54	46.44
KRH20799	Soybean	nucleus	44.47	43.86
KRH27444	Soybean	nucleus, plastid	43.55	43.75
Bra015846.1-P	Field mustard	nucleus	49.77	43.64
CDX68130	Canola	nucleus, plastid	19.59	41.06
Bra003754.1-P	Field mustard	nucleus, plastid	19.59	41.06
AT1G19680.1	Thale cress	nucleus	40.78	39.86
Os01t0261100-01	Rice	cytosol	39.4	39.68
GSMUA_Achr6P08950_001	Banana	nucleus	38.02	39.19
EES00516	Sorghum	cytosol	38.71	38.71
HORVU3Hr1G036290.3	Barley	cytosol	38.25	38.69
TraesCS3A01G176900.1	Wheat	cytosol	37.56	38.08
TraesCS3B01G208100.1	Wheat	cytosol	37.56	38.08
TraesCS3B01G208200.1	Wheat	plastid	37.56	38.0
Zm00001d008306_P012	Maize	cytosol	38.71	37.92
TraesCS3D01G183800.1	Wheat	plastid	37.33	37.85
HORVU3Hr1G036310.2	Barley	plastid	37.33	37.76
TraesCS3D01G183700.1	Wheat	cytosol	37.1	37.7
GSMUA_Achr4P24550_001	Banana	nucleus	36.87	37.56
TraesCS3A01G176600.1	Wheat	plastid	37.1	37.53
CDY39030	Canola	nucleus, plastid	18.43	37.38
OQU86641	Sorghum	nucleus	34.1	34.58
Bra008196.1-P	Field mustard	cytosol	18.43	33.61
GSMUA_Achr10P...	Banana	nucleus	35.02	33.04
Zm00001d040317_P005	Maize	cytosol	33.87	32.1
KRH20198	Soybean	nucleus	8.53	24.67
KRH03610	Soybean	plastid	6.45	22.95
KRH70752	Soybean	nucleus	17.51	18.36
KRH74897	Soybean	nucleus	15.67	18.33

Protein Annotations

EMBL:ACUP02008565	EnsemblPlants:KRH15146	EnsemblPlantsGene:GLYMA_14G071300	EntrezGene:100795191	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF8	PFscan:PS50089
ProteinID:KRH15146	ProteinID:KRH15146.1	ProteinID:KRH15147.1	ProteinID:KRH15148.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000233AE37	UniProt:I1M887	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr14:-:5986366..5990379

Molecular Weight (calculated)

47605.7 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.507

Length

434 amino acids

Sequence
(BLAST)

001: MGSACCVAAK DPNLPNRTGG ESLHRDVVCS PSGSFQWDSR GRFAGEIENP SYHTSHVDSR NVSMELKGSL SSERGNLSDG GSIVENSVTP IFLKSPVDEA
101: LVANLMTPTS DLSMSSNFST VVKNPAESSI PNLSFSIPSV FSTPTADPLP NHNYHHLPSS TPTRWAHRSP AHPLLRQISD SRIMDLKLPD NSISEGRPSF
201: VLSTCSNEMT AGSICGSSDG WSMRTFSELV ASSQRERWSF DSECFGSGRH KISGSSSRFS YSPSMELQSC GACSKLLTER STWSNQKFIS NSDLSVVAVL
301: VCGHSYHAEC LEAMTSEADR YDPACPICMV GDKHLSKLLS RKGLRAESDI KAKNHKISRN RVVDSYLDGG FDVFDRQKGI DLRGKVSKME PSSSARSSFG
401: KPFLRRHFSL GSKWSRSLSE NDSARKKGFW ARYR

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.