Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH27444 | Soybean | nucleus, plastid | 90.68 | 92.36 |
KRH60799 | Soybean | nucleus, plastid | 72.73 | 73.56 |
KRH51493 | Soybean | nucleus | 72.05 | 72.87 |
VIT_03s0038g04400.t01 | Wine grape | nucleus | 61.82 | 59.78 |
VIT_04s0079g00570.t01 | Wine grape | cytosol | 14.77 | 52.42 |
PGSC0003DMT400066093 | Potato | nucleus | 48.64 | 51.32 |
Solyc10g054030.1.1 | Tomato | nucleus | 47.95 | 50.72 |
PGSC0003DMT400028504 | Potato | cytosol, plastid | 12.5 | 50.0 |
Solyc01g109910.2.1 | Tomato | nucleus | 52.05 | 49.78 |
PGSC0003DMT400089080 | Potato | nucleus | 50.45 | 49.66 |
CDY13812 | Canola | cytosol, nucleus, peroxisome | 44.55 | 49.12 |
Bra031193.1-P | Field mustard | nucleus | 44.55 | 47.57 |
AT2G21500.2 | Thale cress | nucleus | 45.0 | 47.03 |
KRH51797 | Soybean | nucleus | 45.0 | 45.83 |
KRH61121 | Soybean | plastid | 45.91 | 45.6 |
AT4G39140.3 | Thale cress | nucleus | 44.32 | 45.45 |
CDY41965 | Canola | nucleus | 43.41 | 45.15 |
KRH05863 | Soybean | nucleus | 44.09 | 44.7 |
KRH15146 | Soybean | nucleus | 43.86 | 44.47 |
Bra011873.1-P | Field mustard | nucleus | 43.64 | 44.34 |
CDX82036 | Canola | nucleus | 40.68 | 44.31 |
CDY42611 | Canola | nucleus | 42.05 | 44.05 |
CDY12123 | Canola | nucleus | 41.14 | 42.89 |
GSMUA_Achr6P08950_001 | Banana | nucleus | 38.41 | 40.14 |
CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 36.36 | 40.0 |
CDX72716 | Canola | nucleus | 34.77 | 39.23 |
Bra010702.1-P | Field mustard | nucleus | 35.91 | 38.26 |
CDX90314 | Canola | nucleus | 35.68 | 37.92 |
Os01t0261100-01 | Rice | cytosol | 36.82 | 37.59 |
EES00516 | Sorghum | cytosol | 37.05 | 37.56 |
TraesCS3A01G176900.1 | Wheat | cytosol | 36.36 | 37.38 |
HORVU3Hr1G036290.3 | Barley | cytosol | 36.36 | 37.3 |
TraesCS3B01G208100.1 | Wheat | cytosol | 36.14 | 37.15 |
HORVU3Hr1G036310.2 | Barley | plastid | 36.14 | 37.06 |
TraesCS3B01G208200.1 | Wheat | plastid | 36.14 | 37.06 |
TraesCS3D01G183700.1 | Wheat | cytosol | 35.91 | 37.0 |
TraesCS3D01G183800.1 | Wheat | plastid | 35.91 | 36.92 |
TraesCS3A01G176600.1 | Wheat | plastid | 35.91 | 36.83 |
Zm00001d008306_P012 | Maize | cytosol | 36.82 | 36.57 |
GSMUA_Achr4P24550_001 | Banana | nucleus | 34.55 | 35.68 |
VIT_04s0079g00560.t01 | Wine grape | cytosol | 12.27 | 34.84 |
Bra033599.1-P | Field mustard | nucleus | 31.36 | 34.76 |
OQU86641 | Sorghum | nucleus | 33.41 | 34.35 |
Zm00001d040317_P005 | Maize | cytosol | 31.36 | 30.13 |
GSMUA_Achr10P... | Banana | nucleus | 30.23 | 28.91 |
KRH20198 | Soybean | nucleus | 8.86 | 26.0 |
KRH03610 | Soybean | plastid | 6.59 | 23.77 |
KRH74897 | Soybean | nucleus | 17.73 | 21.02 |
KRH70752 | Soybean | nucleus | 19.55 | 20.77 |
Protein Annotations
EMBL:ACUP02008309 | EnsemblPlants:KRH20799 | EnsemblPlantsGene:GLYMA_13G201200 | EntrezGene:106795502 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 |
ProteinID:KRH20798.1 | ProteinID:KRH20799 | ProteinID:KRH20799.1 | ProteinID:KRH20800.1 | SEG:seg | SMART:SM00184 |
SUPFAM:SSF57850 | UniParc:UPI00054A3A0A | UniProt:A0A0R0GR48 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr13:+:31476801..31482069
Molecular Weight (calculated)
48963.8 Da
IEP (calculated)
9.146
GRAVY (calculated)
-0.743
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAVCCVAAK DKTIQSASPS EILHRNIRHS PTWNFRWDHR GRVAGEDTAV TWFSNSISGN DGFENKNESS YVSEDGSPLQ NYQIQRNNRL QKSPISEGTA
101: RNVINSSSDQ TISRNISSNV SIEQVKELAE SSTVSCPYPA KLPHSLPSTS LSVSPLPSQS HPLPSSSTPS RWPCHSTGQQ LSRQVSDSRI LGFKTSSNFY
201: SSEERPVFPS WSKESGTHSH GGSLDNWSRP GFSELTSTSL KERWSFDSES FGFNCERLVR SSSQFSNCSV DLQTCGVCSK LLTEKSSWGT QKIIASNDLS
301: VVSVLICGHV YHAECLESLT SEVNKYDPPC PVCTFGEKYT LKLSEKALKA EMDLKAKNKK SKNRIVDRDI DDDSIVYEHF REKGRHGKGP RIDSSSSGRR
401: SNGKPFLRRH FSFGSRSSKS MLDNQPTRKK GFFWAKSSKE
101: RNVINSSSDQ TISRNISSNV SIEQVKELAE SSTVSCPYPA KLPHSLPSTS LSVSPLPSQS HPLPSSSTPS RWPCHSTGQQ LSRQVSDSRI LGFKTSSNFY
201: SSEERPVFPS WSKESGTHSH GGSLDNWSRP GFSELTSTSL KERWSFDSES FGFNCERLVR SSSQFSNCSV DLQTCGVCSK LLTEKSSWGT QKIIASNDLS
301: VVSVLICGHV YHAECLESLT SEVNKYDPPC PVCTFGEKYT LKLSEKALKA EMDLKAKNKK SKNRIVDRDI DDDSIVYEHF REKGRHGKGP RIDSSSSGRR
401: SNGKPFLRRH FSFGSRSSKS MLDNQPTRKK GFFWAKSSKE
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.