Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 75.77 | 79.95 |
| Bra031193.1-P | Field mustard | nucleus | 76.48 | 78.16 |
| AT4G39140.3 | Thale cress | nucleus | 69.83 | 68.53 |
| CDX82036 | Canola | nucleus | 63.9 | 66.58 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 13.06 | 50.0 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 52.97 | 49.01 |
| KRH60799 | Soybean | nucleus, plastid | 50.59 | 48.97 |
| KRH51493 | Soybean | nucleus | 50.12 | 48.51 |
| KRH27444 | Soybean | nucleus, plastid | 47.27 | 46.06 |
| KRH20799 | Soybean | nucleus | 47.03 | 45.0 |
| Solyc10g054030.1.1 | Tomato | nucleus | 42.99 | 43.51 |
| PGSC0003DMT400066093 | Potato | nucleus | 42.99 | 43.41 |
| Solyc01g109910.2.1 | Tomato | nucleus | 46.32 | 42.39 |
| PGSC0003DMT400089080 | Potato | nucleus | 44.66 | 42.06 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 11.88 | 40.32 |
| AT1G75400.1 | Thale cress | plastid | 37.29 | 34.51 |
| EES00516 | Sorghum | cytosol | 33.49 | 32.49 |
| Os01t0261100-01 | Rice | cytosol | 32.54 | 31.79 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 31.83 | 31.46 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 31.35 | 31.35 |
| HORVU3Hr1G036310.2 | Barley | plastid | 31.83 | 31.24 |
| TraesCS3B01G208200.1 | Wheat | plastid | 31.59 | 31.0 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 11.4 | 30.97 |
| Zm00001d008306_P012 | Maize | cytosol | 32.54 | 30.93 |
| TraesCS3D01G183800.1 | Wheat | plastid | 31.12 | 30.61 |
| TraesCS3A01G176600.1 | Wheat | plastid | 31.12 | 30.54 |
| AT1G19680.1 | Thale cress | nucleus | 32.07 | 30.41 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 29.93 | 29.51 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 29.69 | 29.21 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 29.69 | 29.21 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 29.22 | 28.67 |
| OQU86641 | Sorghum | nucleus | 27.79 | 27.34 |
| Zm00001d040317_P005 | Maize | cytosol | 28.5 | 26.2 |
| GSMUA_Achr10P... | Banana | nucleus | 26.6 | 24.35 |
| AT1G14180.1 | Thale cress | nucleus | 18.53 | 22.41 |
| AT5G18260.1 | Thale cress | nucleus, plastid | 12.35 | 16.25 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:816689 | ProteinID:AEC07186.1 | ProteinID:AEC07187.1 | ArrayExpress:AT2G21500 |
| EnsemblPlantsGene:AT2G21500 | RefSeq:AT2G21500 | TAIR:AT2G21500 | RefSeq:AT2G21500-TAIR-G | EnsemblPlants:AT2G21500.2 | TAIR:AT2G21500.2 |
| EMBL:AY093117 | Unigene:At.39561 | EMBL:BT008513 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_850013.1 | RefSeq:NP_850014.1 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS50089 | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | UniProt:Q8RWF9 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000A5330 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At2g21560 [Source:UniProtKB/TrEMBL;Acc:Q8RWF9]
Coordinates
chr2:-:9207432..9210231
Molecular Weight (calculated)
46687.5 Da
IEP (calculated)
9.585
GRAVY (calculated)
-0.688
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVATR DKMVVPNTSA VENFQRNNVR YSPNWSFRWD NRGGRVAGEE TSVSLLSDRI SRNDVSDVKS ETALVSSQGS PLDNFQTQSW QKSPASDQSF
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.