Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54050 | Canola | plastid | 44.06 | 36.25 |
| Bra002147.1-P | Field mustard | nucleus | 42.81 | 35.68 |
| CDY54049 | Canola | plastid | 42.19 | 34.62 |
| CDY38501 | Canola | nucleus | 40.31 | 33.95 |
| AT1G14180.1 | Thale cress | nucleus | 18.44 | 16.95 |
| AT2G21500.2 | Thale cress | nucleus | 16.25 | 12.35 |
| AT1G19680.1 | Thale cress | nucleus | 16.56 | 11.94 |
| AT4G39140.3 | Thale cress | nucleus | 15.94 | 11.89 |
| AT1G75400.1 | Thale cress | plastid | 15.94 | 11.21 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:831944 | ProteinID:AED92529.1 | ArrayExpress:AT5G18260 | EnsemblPlantsGene:AT5G18260 |
| RefSeq:AT5G18260 | TAIR:AT5G18260 | RefSeq:AT5G18260-TAIR-G | EnsemblPlants:AT5G18260.1 | TAIR:AT5G18260.1 | EMBL:AY072182 |
| EMBL:AY096474 | Unigene:At.31453 | ProteinID:BAB09484.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_197327.1 | PO:PO:0000293 | PFscan:PS50089 | PANTHER:PTHR31150 |
| PANTHER:PTHR31150:SF9 | UniProt:Q9FK45 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000009CEE0 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
Coordinates
chr5:-:6036202..6038106
Molecular Weight (calculated)
35675.2 Da
IEP (calculated)
7.008
GRAVY (calculated)
-0.822
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.