Factsheet for VIT_03s0038g04400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0079g00570.t01	Wine grape	cytosol	17.58	64.52
KRH51493	Soybean	nucleus	61.32	64.14
KRH60799	Soybean	nucleus, plastid	60.88	63.68
KRH27444	Soybean	nucleus, plastid	58.9	62.04
KRH20799	Soybean	nucleus	59.78	61.82
PGSC0003DMT400066093	Potato	nucleus	55.16	60.19
Solyc01g109910.2.1	Tomato	nucleus	60.22	59.57
Solyc10g054030.1.1	Tomato	nucleus	54.29	59.38
PGSC0003DMT400028504	Potato	cytosol, plastid	14.29	59.09
PGSC0003DMT400089080	Potato	nucleus	58.02	59.06
VIT_18s0001g13060.t01	Wine grape	nucleus	56.48	58.01
VIT_04s0079g00560.t01	Wine grape	cytosol	19.12	56.13
CDY13812	Canola	cytosol, nucleus, peroxisome	46.59	53.13
AT2G21500.2	Thale cress	nucleus	49.01	52.97
Bra031193.1-P	Field mustard	nucleus	47.03	51.94
AT4G39140.3	Thale cress	nucleus	45.93	48.72
CDX82036	Canola	nucleus	42.64	48.02
CDY12123	Canola	nucleus	43.96	47.39
CDY41965	Canola	nucleus	43.96	47.28
CDY42611	Canola	nucleus	43.3	46.9
Bra011873.1-P	Field mustard	nucleus	44.18	46.42
GSMUA_Achr6P08950_001	Banana	nucleus	41.76	45.13
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	38.9	44.25
EES00516	Sorghum	cytosol	41.76	43.78
Os01t0261100-01	Rice	cytosol	41.32	43.62
Bra010702.1-P	Field mustard	nucleus	39.56	43.58
TraesCS3B01G208200.1	Wheat	plastid	40.88	43.36
CDX72716	Canola	nucleus	37.14	43.33
CDX90314	Canola	nucleus	39.34	43.24
TraesCS3D01G183800.1	Wheat	plastid	40.66	43.22
TraesCS3A01G176600.1	Wheat	plastid	40.66	43.12
HORVU3Hr1G036310.2	Barley	plastid	40.66	43.12
Zm00001d008306_P012	Maize	cytosol	40.88	41.99
TraesCS3B01G208100.1	Wheat	cytosol	38.68	41.12
GSMUA_Achr4P24550_001	Banana	nucleus	38.24	40.85
Bra033599.1-P	Field mustard	nucleus	35.6	40.81
TraesCS3D01G183700.1	Wheat	cytosol	38.24	40.75
TraesCS3A01G176900.1	Wheat	cytosol	38.24	40.65
HORVU3Hr1G036290.3	Barley	cytosol	38.02	40.33
OQU86641	Sorghum	nucleus	36.92	39.25
Zm00001d040317_P005	Maize	cytosol	35.16	34.93
GSMUA_Achr10P...	Banana	nucleus	34.07	33.7
VIT_11s0118g00330.t01	Wine grape	nucleus	13.41	24.8
VIT_08s0007g07610.t01	Wine grape	nucleus	16.7	20.88

Protein Annotations

EntrezGene:100250419	wikigene:100250419	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB60494	ProteinID:CCB60494.1
UniProt:F6I0M8	EMBL:FN596508	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100250419	wikigene:LOC100250419
PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	SUPFAM:SSF57850	UniParc:UPI0001982DA3	ArrayExpress:VIT_03s0038g04400
EnsemblPlantsGene:VIT_03s0038g04400	EnsemblPlants:VIT_03s0038g04400.t01	unigene:Vvi.2347	RefSeq:XP_002283631	RefSeq:XP_002283631.1	RefSeq:XP_010645335.1
RefSeq:XP_010645340.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:3188175..3193837

Molecular Weight (calculated)

49489.7 Da

IEP (calculated)

9.421

GRAVY (calculated)

-0.596

Length

455 amino acids

Sequence
(BLAST)

001: MGSACCVAAR DRTITNGPSC EVMQHRNVRY SPSWSFRWDN RGRVAGEVDT SASWFADGLN RNGGLENKSE TTYASDGGSP LENFQTLTWQ KSPVSEGTAG
101: NLTTPASDQS ISRNISVEVS VEHLELVIVK ESTGSPGVSD PSPAKLSPAL PSPSPTLPSP SSLSTSPVSS QSHILPATST PSRWSRGSPG HHLLRQVSDS
201: RIPGLKSPNY SISEERPPFV LPVWNNDSIR GSYGGSSDGW SMHAFSELMA TSRRERWSFD SESLGFNRDK ITRSSSRISA SPSIDLQTCG VCAKLLTERS
301: SWGGQKIIAS NELSVVAVLI CGHVYHAECL ENMTAEINKY DPACPVCTFG EKQTLKLSEK ALKAEMDLKA KNKRSRNRVV DSDLDGETVV FDHRKSSGRE
401: GKGPKLGSSS SMKSSLGKPF LRRHFSFGSK GTKSFSESHQ STRKKGFFWA KSSRE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.