Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033599.1-P | Field mustard | nucleus | 66.15 | 64.99 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 63.85 | 62.25 |
| CDY42611 | Canola | nucleus | 62.31 | 57.86 |
| CDX90314 | Canola | nucleus | 60.51 | 57.0 |
| AT4G39140.3 | Thale cress | nucleus | 62.56 | 56.88 |
| CDY41965 | Canola | nucleus | 60.77 | 56.03 |
| CDY12123 | Canola | nucleus | 59.49 | 54.98 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 48.21 | 47.12 |
| CDX82036 | Canola | nucleus | 48.72 | 47.03 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 43.33 | 37.14 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 11.79 | 37.1 |
| KRH51493 | Soybean | nucleus | 39.23 | 35.17 |
| KRH27444 | Soybean | nucleus, plastid | 38.72 | 34.95 |
| KRH20799 | Soybean | nucleus | 39.23 | 34.77 |
| KRH60799 | Soybean | nucleus, plastid | 38.72 | 34.71 |
| CDY39030 | Canola | nucleus, plastid | 18.72 | 34.11 |
| CDX68130 | Canola | nucleus, plastid | 17.69 | 33.33 |
| PGSC0003DMT400089080 | Potato | nucleus | 37.69 | 32.89 |
| Solyc01g109910.2.1 | Tomato | nucleus | 38.21 | 32.39 |
| PGSC0003DMT400066093 | Potato | nucleus | 32.82 | 30.7 |
| Solyc10g054030.1.1 | Tomato | nucleus | 32.31 | 30.29 |
| CDY47525 | Canola | nucleus, plastid | 32.31 | 27.21 |
| CDY69665 | Canola | nucleus, plastid | 32.05 | 26.94 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 28.72 | 26.6 |
| Os01t0261100-01 | Rice | cytosol | 28.21 | 25.52 |
| EES00516 | Sorghum | cytosol | 27.95 | 25.12 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 26.92 | 24.59 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 6.92 | 24.55 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 26.92 | 24.53 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 26.92 | 24.53 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 26.67 | 24.41 |
| Zm00001d008306_P012 | Maize | cytosol | 27.44 | 24.15 |
| TraesCS3D01G183800.1 | Wheat | plastid | 26.41 | 24.07 |
| HORVU3Hr1G036310.2 | Barley | plastid | 26.41 | 24.01 |
| TraesCS3B01G208200.1 | Wheat | plastid | 26.15 | 23.78 |
| TraesCS3A01G176600.1 | Wheat | plastid | 26.15 | 23.78 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 25.9 | 23.54 |
| OQU86641 | Sorghum | nucleus | 24.1 | 21.96 |
| Zm00001d040317_P005 | Maize | cytosol | 23.33 | 19.87 |
| GSMUA_Achr10P... | Banana | nucleus | 22.56 | 19.13 |
| CDY33767 | Canola | nucleus, plastid | 15.38 | 19.05 |
| CDY49106 | Canola | plastid | 15.38 | 17.7 |
| CDX81616 | Canola | nucleus, plastid | 14.62 | 16.96 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 6.67 | 16.77 |
| CDY38501 | Canola | nucleus | 15.13 | 15.53 |
| CDY54050 | Canola | plastid | 14.62 | 14.65 |
| CDY54049 | Canola | plastid | 14.62 | 14.62 |
Protein Annotations
| EnsemblPlants:CDX72716 | EnsemblPlantsGene:GSBRNA2T00100310001 | Gene3D:3.30.40.10 | GO:A0A078C6K9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | ProteinID:CDX72716 |
| ProteinID:CDX72716.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE0E63 | MapMan:35.2 | : |
Description
BnaC07g47380D
Coordinates
chrLK031796:+:2789420..2791665
Molecular Weight (calculated)
43202.5 Da
IEP (calculated)
8.375
GRAVY (calculated)
-0.699
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAR DKMVLVVPPN SSAAETERRR HSPPWSFRWD NNNNNNNNRG GGGGRVAGED SSLSWLSDDR SFPRCSSMNT VFEQKENVST EAAPPSYPPP
101: PRLSLSLASQ PSSFPPSPLP SHPASSSTLQ LTQCPRLSKQ LSDGHIYGIN SLSRSSPTEE RLGTPFRYDS SQSRPSEGWS RQAFSEMMSS SRCNEPLSYD
201: NGCFGLERDK IDHHSNRMSN HQKQTCGACA RPLSEKSLWS SQNIFMTNEL SVSAILACGH VYHGECLEQM TPEIDKFDPS CPICTLGEKQ TAMLSEKALK
301: VEMNLKAKRL RNRVLDSDFE CDDFVMFDQS HMASAAESPK LVSSSSVKSY SAKPFLARHF SFGSRGNSKS TKDDLPVRKK GFFWTKSSKI
101: PRLSLSLASQ PSSFPPSPLP SHPASSSTLQ LTQCPRLSKQ LSDGHIYGIN SLSRSSPTEE RLGTPFRYDS SQSRPSEGWS RQAFSEMMSS SRCNEPLSYD
201: NGCFGLERDK IDHHSNRMSN HQKQTCGACA RPLSEKSLWS SQNIFMTNEL SVSAILACGH VYHGECLEQM TPEIDKFDPS CPICTLGEKQ TAMLSEKALK
301: VEMNLKAKRL RNRVLDSDFE CDDFVMFDQS HMASAAESPK LVSSSSVKSY SAKPFLARHF SFGSRGNSKS TKDDLPVRKK GFFWTKSSKI
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.