CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41965	Canola	nucleus	90.0	89.36
AT4G39140.3	Thale cress	nucleus	83.33	81.59
CDY12123	Canola	nucleus	78.57	78.2
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	70.48	74.0
CDY13812	Canola	cytosol, nucleus, peroxisome	60.95	64.16
CDX72716	Canola	nucleus	57.86	62.31
CDX90314	Canola	nucleus	60.24	61.11
CDX82036	Canola	nucleus	53.57	55.69
PGSC0003DMT400028504	Potato	cytosol, plastid	12.62	48.18
KRH60799	Soybean	nucleus, plastid	45.95	44.37
KRH51493	Soybean	nucleus	45.48	43.91
VIT_03s0038g04400.t01	Wine grape	nucleus	46.9	43.3
KRH27444	Soybean	nucleus, plastid	43.33	42.13
KRH20799	Soybean	nucleus	44.05	42.05
Solyc01g109910.2.1	Tomato	nucleus	45.0	41.09
PGSC0003DMT400089080	Potato	nucleus	43.33	40.72
PGSC0003DMT400066093	Potato	nucleus	39.52	39.81
Solyc10g054030.1.1	Tomato	nucleus	38.57	38.94
VIT_04s0079g00570.t01	Wine grape	cytosol	10.71	36.29
CDX68130	Canola	nucleus, plastid	16.67	33.82
CDY39030	Canola	nucleus, plastid	15.71	30.84
CDY47525	Canola	nucleus, plastid	33.57	30.45
CDY69665	Canola	nucleus, plastid	33.33	30.17
GSMUA_Achr6P08950_001	Banana	nucleus	30.24	30.17
GSMUA_Achr4P24550_001	Banana	nucleus	29.76	29.34
EES00516	Sorghum	cytosol	30.0	29.03
Os01t0261100-01	Rice	cytosol	29.76	29.0
HORVU3Hr1G036310.2	Barley	plastid	28.81	28.21
TraesCS3D01G183800.1	Wheat	plastid	28.57	28.04
VIT_04s0079g00560.t01	Wine grape	cytosol	10.24	27.74
TraesCS3B01G208100.1	Wheat	cytosol	28.1	27.57
TraesCS3A01G176900.1	Wheat	cytosol	28.1	27.57
Zm00001d008306_P012	Maize	cytosol	29.05	27.54
TraesCS3B01G208200.1	Wheat	plastid	28.1	27.51
TraesCS3A01G176600.1	Wheat	plastid	28.1	27.51
TraesCS3D01G183700.1	Wheat	cytosol	27.62	27.17
HORVU3Hr1G036290.3	Barley	cytosol	27.38	26.81
OQU86641	Sorghum	nucleus	26.67	26.17
Zm00001d040317_P005	Maize	cytosol	25.71	23.58
CDY33767	Canola	nucleus, plastid	16.43	21.9
GSMUA_Achr10P...	Banana	nucleus	23.57	21.52
CDY49106	Canola	plastid	16.19	20.06
CDX81616	Canola	nucleus, plastid	15.24	19.05
CDY54050	Canola	plastid	15.0	16.2
CDY54049	Canola	plastid	14.76	15.9
CDY38501	Canola	nucleus	13.33	14.74

Protein Annotations

EnsemblPlants:CDY42611	EnsemblPlantsGene:GSBRNA2T00075117001	Gene3D:3.30.40.10	GO:A0A078HY42	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089	ProteinID:CDY42611
ProteinID:CDY42611.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EDCD36	UniProt:A0A078HY42	MapMan:35.2

Description

BnaC01g00230DBnaC01g00230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY42]

Coordinates

chrLK032530:-:67103..69400

Molecular Weight (calculated)

46381.8 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.704

Length

420 amino acids

Sequence
(BLAST)

001: MGNACCVAAR DKMVLVVPPN SSAAETERRR HSPPWSFRWD NHNRRGRVAG EESSLTWLSD GNDGSDFKSE SAFVSSQGSP FDSFRTHTLQ KSPASDLSFP
101: RNSSMDTVFE QKENDSTQSV APSYPSPAQT SSFPASPLSP QSYLHPASSS SSLKLTQRPR LSKQVSDSLI YGMNSLSRGS ATEETQGTPL RYDSSQSGPS
201: ESWSLQASSE MMSSSRSNEP FSYDNDCFGI DRDKIDHHGN RVMSNHHQQI CGACSRPLSE KSMWSSKKIF MTNELSVSAI LACGHVYHGE CLEQMTPEID
301: KFDPSCPICT FGEKKTAKLS EKALKVEMDL KARHNKRLRN RVLDSDFDCD DLVMYDHSHM AGAAADKSPE LVSSSSVKGY AAKPFLARHF SFGSRGNSKA
401: AEENLAVKKK GFFWTKSSKI

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.