Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G39140.3 | Thale cress | nucleus | 78.0 | 72.73 |
| CDY12123 | Canola | nucleus | 74.75 | 70.85 |
| CDY42611 | Canola | nucleus | 74.0 | 70.48 |
| CDY41965 | Canola | nucleus | 74.25 | 70.21 |
| CDX72716 | Canola | nucleus | 62.25 | 63.85 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 57.5 | 57.64 |
| CDX90314 | Canola | nucleus | 56.25 | 54.35 |
| CDX82036 | Canola | nucleus | 50.5 | 50.0 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 44.25 | 38.9 |
| KRH51493 | Soybean | nucleus | 42.25 | 38.85 |
| KRH60799 | Soybean | nucleus, plastid | 41.5 | 38.16 |
| KRH20799 | Soybean | nucleus | 40.0 | 36.36 |
| KRH27444 | Soybean | nucleus, plastid | 39.25 | 36.34 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 11.0 | 35.48 |
| Solyc01g109910.2.1 | Tomato | nucleus | 40.75 | 35.43 |
| PGSC0003DMT400089080 | Potato | nucleus | 39.25 | 35.12 |
| Solyc10g054030.1.1 | Tomato | nucleus | 35.25 | 33.89 |
| PGSC0003DMT400066093 | Potato | nucleus | 35.25 | 33.81 |
| CDX68130 | Canola | nucleus, plastid | 16.5 | 31.88 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 8.5 | 30.91 |
| CDY39030 | Canola | nucleus, plastid | 16.5 | 30.84 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 29.25 | 27.79 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 28.5 | 26.76 |
| CDY47525 | Canola | nucleus, plastid | 30.75 | 26.57 |
| CDY69665 | Canola | nucleus, plastid | 30.5 | 26.29 |
| Os01t0261100-01 | Rice | cytosol | 28.25 | 26.22 |
| EES00516 | Sorghum | cytosol | 28.25 | 26.04 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 27.0 | 25.23 |
| HORVU3Hr1G036310.2 | Barley | plastid | 27.0 | 25.17 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 26.75 | 25.06 |
| TraesCS3D01G183800.1 | Wheat | plastid | 26.75 | 25.0 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 26.75 | 25.0 |
| Zm00001d008306_P012 | Maize | cytosol | 27.5 | 24.83 |
| TraesCS3B01G208200.1 | Wheat | plastid | 26.5 | 24.71 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 26.25 | 24.48 |
| TraesCS3A01G176600.1 | Wheat | plastid | 26.25 | 24.48 |
| OQU86641 | Sorghum | nucleus | 25.75 | 24.07 |
| Zm00001d040317_P005 | Maize | cytosol | 23.75 | 20.74 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 8.0 | 20.65 |
| GSMUA_Achr10P... | Banana | nucleus | 23.25 | 20.22 |
| CDY33767 | Canola | nucleus, plastid | 15.25 | 19.37 |
| CDX81616 | Canola | nucleus, plastid | 14.75 | 17.56 |
| CDY49106 | Canola | plastid | 14.5 | 17.11 |
| CDY38501 | Canola | nucleus | 13.25 | 13.95 |
| CDY54050 | Canola | plastid | 13.25 | 13.62 |
| CDY54049 | Canola | plastid | 13.25 | 13.59 |
Protein Annotations
| EnsemblPlants:CDY56767 | EnsemblPlantsGene:GSBRNA2T00020061001 | Gene3D:3.30.40.10 | GO:A0A078J350 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | ProteinID:CDY56767 |
| ProteinID:CDY56767.1 | SEG:seg | UniParc:UPI0004EE7F9C | UniProt:A0A078J350 | MapMan:35.2 | : |
Description
BnaA06g40780DBnaA06g40780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J350]
Coordinates
chrLK033516:+:50026..51911
Molecular Weight (calculated)
44120.5 Da
IEP (calculated)
8.676
GRAVY (calculated)
-0.707
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAP DKMVLSAAET ERRHSPPWSF RWDNHNHNHN HNHNHNRGGG RVAGADSSLS RNDGFQTQTL HKSPPSDLSF PTCSSMNTLF EQKENVSTEA
101: APPSYPPPPR LSLSLASQPS SFPPSPLPSH PASSSTLQLT QRRRLSKQLS DGQIYGINSL SRSSSTEERQ GTTFRYDSSQ SGPSEGWSRQ AFSEIMSSSR
201: CNQPLSNDND CFGLERDKIA DPGNRMSIHQ QQTCGACARP LSEKSLWSSQ NIFMTNELSV SAILACGHVY HGDCLEQMTP EVDKFDPSCT ICILGEKKTA
301: KLSEKALKVE MNLKAKRLRN RVLNSDFECD DFVMFDHSHM ASAAAAESPK LVSSSSVKSY SAKPFLARHL SFGSRGNSKS TKEDLPVRKK GFFWTKSSKI
101: APPSYPPPPR LSLSLASQPS SFPPSPLPSH PASSSTLQLT QRRRLSKQLS DGQIYGINSL SRSSSTEERQ GTTFRYDSSQ SGPSEGWSRQ AFSEIMSSSR
201: CNQPLSNDND CFGLERDKIA DPGNRMSIHQ QQTCGACARP LSEKSLWSSQ NIFMTNELSV SAILACGHVY HGDCLEQMTP EVDKFDPSCT ICILGEKKTA
301: KLSEKALKVE MNLKAKRLRN RVLNSDFECD DFVMFDHSHM ASAAAAESPK LVSSSSVKSY SAKPFLARHL SFGSRGNSKS TKEDLPVRKK GFFWTKSSKI
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.