Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 78.47 | 79.45 |
| AT2G21500.2 | Thale cress | nucleus | 66.58 | 63.9 |
| CDY41965 | Canola | nucleus | 56.44 | 53.9 |
| CDY42611 | Canola | nucleus | 55.69 | 53.57 |
| CDY12123 | Canola | nucleus | 55.2 | 52.84 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 50.0 | 50.5 |
| CDX90314 | Canola | nucleus | 51.73 | 50.48 |
| CDX72716 | Canola | nucleus | 47.03 | 48.72 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 12.38 | 45.45 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 48.02 | 42.64 |
| KRH60799 | Soybean | nucleus, plastid | 45.79 | 42.53 |
| KRH51493 | Soybean | nucleus | 44.8 | 41.61 |
| KRH27444 | Soybean | nucleus, plastid | 43.56 | 40.74 |
| KRH20799 | Soybean | nucleus | 44.31 | 40.68 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 11.63 | 37.9 |
| PGSC0003DMT400089080 | Potato | nucleus | 41.58 | 37.58 |
| Solyc01g109910.2.1 | Tomato | nucleus | 42.33 | 37.17 |
| PGSC0003DMT400066093 | Potato | nucleus | 38.12 | 36.93 |
| Solyc10g054030.1.1 | Tomato | nucleus | 37.13 | 36.06 |
| CDX68130 | Canola | nucleus, plastid | 17.57 | 34.3 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 12.38 | 32.26 |
| CDY47525 | Canola | nucleus, plastid | 36.88 | 32.18 |
| CDY69665 | Canola | nucleus, plastid | 36.39 | 31.68 |
| EES00516 | Sorghum | cytosol | 32.67 | 30.41 |
| CDY39030 | Canola | nucleus, plastid | 16.09 | 30.37 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 31.44 | 30.17 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 31.68 | 30.05 |
| Os01t0261100-01 | Rice | cytosol | 31.93 | 29.93 |
| TraesCS3D01G183800.1 | Wheat | plastid | 30.45 | 28.74 |
| HORVU3Hr1G036310.2 | Barley | plastid | 30.45 | 28.67 |
| TraesCS3A01G176600.1 | Wheat | plastid | 30.45 | 28.67 |
| Zm00001d008306_P012 | Maize | cytosol | 31.44 | 28.67 |
| TraesCS3B01G208200.1 | Wheat | plastid | 30.2 | 28.44 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 28.96 | 27.27 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 28.71 | 27.1 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 28.47 | 26.87 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 28.22 | 26.7 |
| OQU86641 | Sorghum | nucleus | 27.97 | 26.4 |
| Zm00001d040317_P005 | Maize | cytosol | 26.98 | 23.8 |
| GSMUA_Achr10P... | Banana | nucleus | 26.73 | 23.48 |
| CDY33767 | Canola | nucleus, plastid | 17.57 | 22.54 |
| CDY49106 | Canola | plastid | 18.32 | 21.83 |
| CDX81616 | Canola | nucleus, plastid | 16.83 | 20.24 |
| CDY38501 | Canola | nucleus | 16.58 | 17.63 |
| CDY54050 | Canola | plastid | 13.61 | 14.14 |
| CDY54049 | Canola | plastid | 13.37 | 13.85 |
Protein Annotations
| EnsemblPlants:CDX82036 | EnsemblPlantsGene:GSBRNA2T00137019001 | Gene3D:3.30.40.10 | GO:A0A078CY24 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | ProteinID:CDX82036 |
| ProteinID:CDX82036.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EEF538 | MapMan:35.2 | : |
Description
BnaC08g35650D
Coordinates
chrLK031826:-:1984717..1987172
Molecular Weight (calculated)
44273.6 Da
IEP (calculated)
9.479
GRAVY (calculated)
-0.706
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAH DKMVLPNTSA VEGLQRNNAR YSPNWSFRWD NRGRVAGEDT SLSWLSDGIS RNDGSDVKSE SAFVSSQGSP LNHLQTQSWQ KSPASDQSFS
101: RNASMDTVSE QITQNHVKLS VSLASQPSSP LSSHSHLPLP PASSSTLKLT PRARLSKQVS DSQILGFNSP TEERLGSESH SGPSDGWSTQ AFSEMMAYSR
201: RESCSYDNEC LLGPGRGKID HQGNRKPSDQ QTCGACSRPL SQKSLLSSQK ICATNELSVA AILACGHVYH SECLEQMTPE TDKFDPQCPV CTLGEKRTFK
301: LSEKALRADL DLRAKQNKML RKHVVDRDDF VMFDHRPNAA ASGSGGHKGN VSKLLTSSSL RSYSPKPFLA RHFSFGSRSN SVKSPKENHS ARKKGFFWTK
401: SSKI
101: RNASMDTVSE QITQNHVKLS VSLASQPSSP LSSHSHLPLP PASSSTLKLT PRARLSKQVS DSQILGFNSP TEERLGSESH SGPSDGWSTQ AFSEMMAYSR
201: RESCSYDNEC LLGPGRGKID HQGNRKPSDQ QTCGACSRPL SQKSLLSSQK ICATNELSVA AILACGHVYH SECLEQMTPE TDKFDPQCPV CTLGEKRTFK
301: LSEKALRADL DLRAKQNKML RKHVVDRDDF VMFDHRPNAA ASGSGGHKGN VSKLLTSSSL RSYSPKPFLA RHFSFGSRSN SVKSPKENHS ARKKGFFWTK
401: SSKI
001: MGNACCVATR DKMVVPNTSA VENFQRNNVR YSPNWSFRWD NRGGRVAGEE TSVSLLSDRI SRNDVSDVKS ETALVSSQGS PLDNFQTQSW QKSPASDQSF
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I
Arabidopsis Description
At2g21560 [Source:UniProtKB/TrEMBL;Acc:Q8RWF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.