CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022317_P001	Maize	mitochondrion, plastid	74.86	78.92
Zm00001d022320_P001	Maize	plastid	75.14	78.09
KXG36805	Sorghum	cytosol	68.11	72.21
TraesCS2A01G143600.1	Wheat	cytosol	63.78	70.24
TraesCS2D01G147200.1	Wheat	cytosol	63.24	69.64
TraesCS2B01G168600.1	Wheat	cytosol	62.7	69.05
Os07t0643100-01	Rice	plasma membrane	64.32	68.99
Os07t0643000-01	Rice	plasma membrane	60.0	63.25
OQU90362	Sorghum	mitochondrion, plastid	50.0	56.4
EER99798	Sorghum	plastid	48.11	50.0
EES08277	Sorghum	plastid	42.16	43.7
EES08278	Sorghum	plastid	39.46	41.71
EER97518	Sorghum	plastid	38.11	40.87
EES00295	Sorghum	mitochondrion, plastid	26.49	36.84
EER90762	Sorghum	cytosol	31.62	35.24
OQU88480	Sorghum	cytosol	31.08	35.17
OQU86289	Sorghum	cytosol	30.27	34.57
OQU88478	Sorghum	cytosol	30.54	34.14
EER98685	Sorghum	cytosol	30.27	33.04
EER98018	Sorghum	cytosol	30.0	32.94
EER98020	Sorghum	cytosol	30.54	32.29
EER95897	Sorghum	cytosol	31.35	31.61
KXG21982	Sorghum	cytosol	30.27	31.55
EER98021	Sorghum	cytosol, extracellular, peroxisome	30.81	30.89
EES00296	Sorghum	cytosol	28.38	30.88
EES18227	Sorghum	cytosol	28.65	29.28
EES18228	Sorghum	cytosol	28.11	28.65
EER95156	Sorghum	mitochondrion	28.38	28.23
OQU79889	Sorghum	cytosol	20.54	28.15
EER92547	Sorghum	cytosol	25.14	28.1
EES14122	Sorghum	cytosol	24.86	26.98
EES09618	Sorghum	endoplasmic reticulum, vacuole	26.76	26.4
OQU86288	Sorghum	mitochondrion	24.59	22.14

Protein Annotations

EnsemblPlants:OQU90360	EnsemblPlantsGene:SORBI_3002G394700	EntrezGene:8073098	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF133	PFAM:PF07859	ProteinID:OQU90360	ProteinID:OQU90360.1	RefSeq:XP_002463274.1
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0001A83EB0	UniProt:A0A1W0W7I6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr2:-:74735345..74737082

Molecular Weight (calculated)

40596.5 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.037

Length

370 amino acids

Sequence
(BLAST)

001: MAASSSSNTP LRRRRTRTPS LPWTVRIQAA ALEVAHRLDG SIRRPLFWLG DLKVKVGASH AQPRSDVLLV RSADITIDAS RGLWARVFCP SAAVIADADD
101: DAAPLPIFVY FHGVLFSASS RPYDAFCRRL CRELRAVVVS VNYRLAPEHR FPAAYDDGVA ALRYLDETTP IPLPLPPDLL HGAVDLSSCF LVGDSSGANM
201: VHHVAQRWAS SMSSATTATS TLPPPPPLRL RLAGAVLIQP FFGGEERTEA ELAFDKACRI LSVARADHYW REFLPEGATR DHPAARVCGE GVELADTFPP
301: AMVVSGGFDL LKDWHARYVE TLRAKGKLVR VVEYPDAVHG FYAFPELADS GKLVEDMKLF VHDHMSGGFD

Best Arabidopsis Sequence Match ( AT3G05120.1 )
(BLAST)

001: MAASDEVNLI ESRTVVPLNT WVLISNFKVA YNILRRPDGT FNRHLAEYLD RKVTANANPV DGVFSFDVLI DRRINLLSRV YRPAYADQEQ PPSILDLEKP
101: VDGDIVPVIL FFHGGSFAHS SANSAIYDTL CRRLVGLCKC VVVSVNYRRA PENPYPCAYD DGWIALNWVN SRSWLKSKKD SKVHIFLAGD SSGGNIAHNV
201: ALRAGESGID VLGNILLNPM FGGNERTESE KSLDGKYFVT VRDRDWYWKA FLPEGEDREH PACNPFSPRG KSLEGVSFPK SLVVVAGLDL IRDWQLAYAE
301: GLKKAGQEVK LMHLEKATVG FYLLPNNNHF HNVMDEISAF VNAEC

Arabidopsis Description

GID1AGID1A [Source:UniProtKB/TrEMBL;Acc:A0A178VM30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.