Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20114 | Canola | nucleus | 92.63 | 92.44 |
| CDX97665 | Canola | nucleus | 74.95 | 73.71 |
| CDX98557 | Canola | nucleus | 76.0 | 73.08 |
| AT3G15390.1 | Thale cress | nucleus | 69.68 | 67.55 |
| Solyc07g063240.2.1 | Tomato | cytosol | 35.37 | 32.37 |
| PGSC0003DMT400032412 | Potato | cytosol | 35.58 | 30.84 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 31.58 | 30.3 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 15.16 | 28.35 |
| Zm00001d051245_P001 | Maize | nucleus | 28.42 | 27.05 |
| Os02t0639700-01 | Rice | nucleus | 26.74 | 26.02 |
| OQU85378 | Sorghum | cytosol | 26.74 | 25.4 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 28.0 | 25.24 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 28.0 | 25.19 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 27.79 | 25.05 |
| CDX71154 | Canola | nucleus | 21.05 | 22.73 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 12.63 | 21.35 |
| CDY61025 | Canola | nucleus | 20.84 | 19.92 |
| CDY32688 | Canola | nucleus | 21.26 | 19.84 |
| CDY02832 | Canola | nucleus | 21.05 | 19.16 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 19.79 | 10.89 |
Protein Annotations
| EnsemblPlants:CDY21839 | EnsemblPlantsGene:GSBRNA2T00018132001 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 | PFAM:PF08590 |
| ProteinID:CDY21839 | ProteinID:CDY21839.1 | SEG:seg | SMART:SM01162 | UniParc:UPI0004EE014D | UniProt:A0A078G8X4 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC01g36090DBnaC01g36090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8X4]
Coordinates
chrLK032125:-:107498..110702
Molecular Weight (calculated)
53116.6 Da
IEP (calculated)
5.305
GRAVY (calculated)
-0.693
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMIGSSSSH NDQDSRSLQV LLEAFGSRFS LDDITAAYHE ASQNVDVAGE ILFAMTEKTT ESDQVEKNEA THAKAKVLRP KKSSVSVGSV SSVIGKEYVR
101: ARPVSNPRQE ASKPVKIDSK DIPETEMWCE ESKEANIISR APTEVEEFIV KMLGEGFQAS PELIHQILGV CGYDVKKSTE KLLDLSDTKK HADAGISNEL
201: MSKVDPQRQG STSCNQVEFS QSGGARTLTG SEEGGKDNSG LEKEVLEALF SCAERYEEVP KLTRRFREIR GRAAGRPVVK PLEDPFQERV VTVKQSPHTS
301: KEDEDDENEY KALRKAVHEN LHEMKEYYGA AVEAFSKGET ERARRLVEKG HFFGEKAREA DDKSIAKMLE VKEEDNGSTY KEDEVVIVNV NELEPREALR
401: LLKLQLKNFT GIPSIKCLRV KLGDNKEDSK CKRRHTAIAK LLEGESIAWS KEDDGLVMMI RIDEIDPEKL SFAKK
101: ARPVSNPRQE ASKPVKIDSK DIPETEMWCE ESKEANIISR APTEVEEFIV KMLGEGFQAS PELIHQILGV CGYDVKKSTE KLLDLSDTKK HADAGISNEL
201: MSKVDPQRQG STSCNQVEFS QSGGARTLTG SEEGGKDNSG LEKEVLEALF SCAERYEEVP KLTRRFREIR GRAAGRPVVK PLEDPFQERV VTVKQSPHTS
301: KEDEDDENEY KALRKAVHEN LHEMKEYYGA AVEAFSKGET ERARRLVEKG HFFGEKAREA DDKSIAKMLE VKEEDNGSTY KEDEVVIVNV NELEPREALR
401: LLKLQLKNFT GIPSIKCLRV KLGDNKEDSK CKRRHTAIAK LLEGESIAWS KEDDGLVMMI RIDEIDPEKL SFAKK
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.