Factsheet for GSMUA_Achr4P26110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0639700-01	Rice	nucleus	41.01	41.6
HORVU2Hr1G098380.15	Barley	cytosol, nucleus, plastid	21.01	40.94
TraesCS2B01G436800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	41.21	38.71
OQU85378	Sorghum	cytosol	38.99	38.6
TraesCS2A01G417900.3	Wheat	nucleus	41.01	38.45
TraesCS2D01G415100.1	Wheat	nucleus	40.81	38.33
Zm00001d051245_P001	Maize	nucleus	38.59	38.28
HORVU2Hr1G098290.4	Barley	cytosol, nucleus	20.2	35.59
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	6.67	35.48
VIT_10s0597g00020.t01	Wine grape	cytosol	30.3	33.19
Bra027247.1-P	Field mustard	nucleus	31.92	32.71
CDX97665	Canola	nucleus	31.92	32.71
CDX98557	Canola	nucleus	32.53	32.59
AT3G15390.1	Thale cress	nucleus	31.72	32.04
CDY21839	Canola	nucleus	30.3	31.58
Bra021108.1-P	Field mustard	nucleus	30.1	31.3
CDY20114	Canola	nucleus	29.9	31.09
Solyc07g063240.2.1	Tomato	cytosol	32.53	31.02
KRH21455	Soybean	vacuole	32.73	30.86
PGSC0003DMT400032412	Potato	cytosol	32.93	29.74
GSMUA_Achr7P14320_001	Banana	nucleus	21.82	25.0
TraesCS2B01G206400.1	Wheat	mitochondrion	27.47	15.76

Protein Annotations

EnsemblPlants:GSMUA_Achr4P26110_001	EnsemblPlants:GSMUA_Achr4T26110_001	EnsemblPlantsGene:GSMUA_Achr4G26110_001	InterPro:DUF1771	PANTHER:PTHR13308	PANTHER:PTHR13308:SF37
PFAM:PF08590	SEG:seg	SMART:SM01162	UniParc:UPI000296DDEC	UniProt:M0SS72	MapMan:35.1

Description

DUF1771 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G26110_001]

Coordinates

chr4:+:25523980..25532682

Molecular Weight (calculated)

55471.8 Da

IEP (calculated)

5.366

GRAVY (calculated)

-0.636

Length

495 amino acids

Sequence
(BLAST)

001: MSTLYTSEHD DETRALNALL DAFGTFCTLE DIASAYCKAG RDVCKAGDML YQLQESSSSG FRHAQIGKNV PQPEESSDED NLKCSILLGK NSKGTKPKKL
101: SVSVGTISSV LGKKYVGVPS SRNESCETTK PPKLEIKEQM LDVLESESFM PNSVQSSTLN DKDVEEFLFS MLGDGFKLSM DVIRDVLGCC GYNMKKSMEE
201: LLIISSNTLE KGKAVDYDDL RKSAGKGSQT EKFPYEDCCP NSPSSVRNIP RHSSMEQKNS NLPMEVIQSL FNVPERSEEE QKIKRREMGL NRMRVVGQKA
301: VTKPLEDLVL SSTTDIPNIR QVVNDGPVAE EDDDYQVLRR AAKLHWDSMK QYYEAAVDAF TRGDNEAASY HIEQGKYYNQ KAREADEKSA AMLVEPRKTS
401: NKDEITLDLQ PHCAKEALKL SKLLLCSLAD IPTLRYLKLV IGADSEDRKQ GKKRRLVLKL LENESIKWTE SDDNSGTIYI QLDQVNPKKL SFAKE

Best Arabidopsis Sequence Match ( AT3G15390.1 )
(BLAST)

001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK

Arabidopsis Description

SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.