Factsheet for Bra024930.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47590.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G47590.1	Bra039324.1-P	AT2G45660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17722	Canola	cytosol	98.85	98.85
Bra024932.1-P	Field mustard	cytosol	61.54	63.49
AT5G47590.1	Thale cress	cytosol	60.38	59.47
Bra022079.1-P	Field mustard	cytosol	43.85	56.72
Bra024976.1-P	Field mustard	cytosol	57.69	56.39
Bra034108.1-P	Field mustard	cytosol	50.77	56.17
Bra022083.1-P	Field mustard	cytosol	40.0	55.62
Bra022080.1-P	Field mustard	cytosol	20.77	49.54
Bra022051.1-P	Field mustard	cytosol	47.31	47.67
Bra022085.2-P	Field mustard	cytosol	29.62	47.53
Bra002567.1-P	Field mustard	cytosol	49.62	33.86
Bra040740.1-P	Field mustard	cytosol	28.46	29.02
Bra038484.1-P	Field mustard	cytosol	29.23	28.68
Bra012708.1-P	Field mustard	cytosol	26.15	27.2
Bra012707.1-P	Field mustard	cytosol	25.38	26.83
Bra008244.1-P	Field mustard	cytosol	27.31	25.09
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	13.08	23.94
Bra038485.1-P	Field mustard	cytosol	20.38	23.56
Bra012705.1-P	Field mustard	cytosol	28.85	18.8

Protein Annotations

EnsemblPlants:Bra024930.1	EnsemblPlants:Bra024930.1-P	EnsemblPlantsGene:Bra024930	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000253FA84	UniProt:M4E824
MapMan:35.1	:	:	:	:	:

Description

AT5G47590 (E=3e-077) | heat shock protein-related

Coordinates

chrA06:+:24289414..24290421

Molecular Weight (calculated)

28266.5 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.232

Length

260 amino acids

Sequence
(BLAST)

001: MVGFTTCIDI STLPTDMEGF YATNNQFQKR GPKGFIQVKV LDDDKLYVRV DLPGVPDDAV HHRVDAVRQK VVFFSAVAFN DGYEKQGVRE YSGTAGLGCD
101: CCEITGVDAK MKDGVLRMIL SRVKVKDHDT KCTHTVPPFT GKSGRRVEEH PFVVKGRKRA FVGEPTADGG LFFAVDVPGV GDGDVEVLAN ESEIKFTAEV
201: KNVFEHDESA GRLYLGSIDT SWSGDSAASL LSHYNITGAV NFGVLKVLIT PRPNTGGTKE

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.